PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_014550_ksfi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 363aa    MW: 40922.7 Da    PI: 6.9305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_014550_ksfi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.8e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W +eEd +l+ +++++G+  +W + ++++g++R++k+c++rw++yl
  Bv1_014550_ksfi.t1 14 RGPWAPEEDAKLKSYIEKHGTAgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        89******************99*************************97 PP
2Myb_DNA-binding40.27.9e-1369111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g++++eEd+ ++ +    G++ W+ Ia+ ++ gRt++++k++w++
  Bv1_014550_ksfi.t1  69 GKFSEEEDKVIISLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.195962IPR017930Myb domain
SuperFamilySSF466894.59E-2611109IPR009057Homeodomain-like
SMARTSM007173.1E-111364IPR001005SANT/Myb domain
PfamPF002495.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241569IPR009057Homeodomain-like
CDDcd001671.10E-81662No hitNo description
PROSITE profilePS5129423.04963117IPR017930Myb domain
SMARTSM007178.4E-1267115IPR001005SANT/Myb domain
PfamPF002491.0E-1169111IPR001005SANT/Myb domain
CDDcd001672.29E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRAPCCDKD NVKRGPWAPE EDAKLKSYIE KHGTAGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGK FSEEEDKVII SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QRRDHQQQAR KKSNLLIKQE ENNLVEPISF SSSFNTTQVS YWPQLTTTSM PGAISTPNYS  180
NFSSELCHGL NDHNSIRKLL MKVGGNYDNF TNPPFIPHYN NTTYPSNIII KQNNNHSNLN  240
SDTMISSEMT NSSLYNLGGS SGVEIGMVEG QRSTFPPELE ELMSSNPQKG VDGVELFYGD  300
YGNKFVNNDG STSDNTTCGE SSSWDEMTSL VSLHNLESDC NVLIQGIGEE DQFEENLRYP  360
TPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687509.10.0PREDICTED: transcription factor RAX3-like
TrEMBLJ7FAJ61e-105J7FAJ6_QUESU; R2R3-MYB transcription factor MYB1.2
STRINGXP_010687509.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-79myb domain protein 68