PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_012860_aztz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 638aa    MW: 71237.3 Da    PI: 8.5472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_012860_aztz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.1e-201499899
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          +l+s+rl +p kf+++ gg + +   l+l  +sg+ W v+l    + g+ ++++GW+ Fvk++ ++ gD++vF++dg+s+f  +v++f++
  Bv1_012860_aztz.t1 14 LPNLSSNRLKVPSKFVKHLGGRTSG--SLSLVGPSGNIWHVNL--FEYNGHLFFQDGWSTFVKDHSIECGDSLVFEYDGDSNF--TVQIFDQ 99
                        678999**********777988655..6***************..99999*****************************9999..****997 PP
2B344.62.5e-14262357198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+ v+  s+ + ++ l +p +f + h   +++ +++tl++++g+ W v+ i   +++  +++l +GW  Fv+ n +k  D+++F+l+g  +
  Bv1_012860_aztz.t1 262 FVRVMCYSNISGNSTLKIPTHFSRLHF--PNCRIKVTLMNLDGKCWIVNSIPsaKQHMTTHTLCGGWIAFVRGNSIKIEDVCIFELVG--N 348
                         566777788888999********9998..45999****************66334444448888*********************988..8 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                         fe++v+v+r
  Bv1_012860_aztz.t1 349 FEMRVRVIR 357
                         999999987 PP
3B359.84.8e-19514605198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f kv+++s+v+ s  l +p+kf +++        +++++l++++g+sW+v+    +++ ++ + +GW +F++ ngLk+gD++vF+l+++  
  Bv1_012860_aztz.t1 514 FMKVMMSSNVGGSFTLAVPRKFSTAYlpC----YKTEVILRNLRGESWNVTS--GRYGYQTKFYGGWMSFARMNGLKVGDTCVFELIDE-- 596
                         89*********************999532....3358***************..99999999***********************9984.. PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                         + l v+vf+
  Bv1_012860_aztz.t1 597 RVLQVRVFE 605
                         445888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-252102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-263102IPR015300DNA-binding pseudobarrel domain
CDDcd100177.41E-21798No hitNo description
PROSITE profilePS5086314.727100IPR003340B3 DNA binding domain
SMARTSM010191.2E-169100IPR003340B3 DNA binding domain
PfamPF023629.9E-181499IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-20255357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-23255357IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-18260357No hitNo description
PfamPF023624.2E-12262357IPR003340B3 DNA binding domain
SMARTSM010193.8E-9262359IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323262359IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-24507605IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-24507605IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-22512604No hitNo description
PROSITE profilePS5086315.016514607IPR003340B3 DNA binding domain
PfamPF023621.8E-16514605IPR003340B3 DNA binding domain
SMARTSM010195.5E-18514607IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MMSGRRPHFL EVFLPNLSSN RLKVPSKFVK HLGGRTSGSL SLVGPSGNIW HVNLFEYNGH  60
LFFQDGWSTF VKDHSIECGD SLVFEYDGDS NFTVQIFDQS SCEKDEAFYA NCTQLASECC  120
ENLGKKRERD VEAPKLKIVA EKKMRGSWLP VNLYVPAENK EHKLKTRTKN CQDFRKTVTS  180
GHDITTKNFA QSSDRTVVLA IAAPRGPDGM ANSVDFRVRK IASKVKKVLK KTIKTHTQNI  240
PSISKFIESK AAQYFTSTFP YFVRVMCYSN ISGNSTLKIP THFSRLHFPN CRIKVTLMNL  300
DGKCWIVNSI PSAKQHMTTH TLCGGWIAFV RGNSIKIEDV CIFELVGNFE MRVRVIRLGL  360
EGMECQIGSI PVDDDGVTSG RQCLGTVENV AQATGVHPSK DLEQTIEPCT FQDNKHEKKT  420
YKRPYMLQEA ASSIGTVAGS IFVKGPAYAS KSSIETGDDS TSDDLLVCNA GETISYQTSA  480
NNQLDLQAVP TKNMQPRAEE ASEAVAFNSP FPSFMKVMMS SNVGGSFTLA VPRKFSTAYL  540
PCYKTEVILR NLRGESWNVT SGRYGYQTKF YGGWMSFARM NGLKVGDTCV FELIDERVLQ  600
VRVFEGRQKA LKNLNDEAVA DDLTVSIESI QFRDLPEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683976.10.0PREDICTED: B3 domain-containing protein Os01g0723500 isoform X1
TrEMBLA0A0K9RPH00.0A0A0K9RPH0_SPIOL; Uncharacterized protein
STRINGXP_010683976.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-17B3 family protein