PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_011500_cydk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 741aa    MW: 82207.4 Da    PI: 6.5581
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_011500_cydk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.11.6e-3077161187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r++m+  +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ +++  + +t+++fdqlea
  Bv1_011500_cydk.t1  77 RWPRQETLALLKIRSDMDVVFRDSSLKGPLWEEVSRKMAELGYHRSAKKCKEKFENVYKYHKRTKDGRVGKS--DGKTYRFFDQLEA 161
                         8********************************************************************964..5557*******85 PP
2trihelix109.61.9e-34545630187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r++++++++++  k+plWee+s++mr++g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Bv1_011500_cydk.t1 545 RWPKAEVQALINLRTNLDQKYQENGPKGPLWEEISAAMRKHGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 630
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.85370134IPR017877Myb-like domain
SMARTSM007170.003274136IPR001005SANT/Myb domain
PfamPF138372.4E-2076162No hitNo description
CDDcd122033.19E-2776141No hitNo description
SMARTSM007177.0E-4542604IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-4543601IPR009057Homeodomain-like
CDDcd122039.44E-31544609No hitNo description
PfamPF138371.4E-23544631No hitNo description
PROSITE profilePS500907.306544602IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MLGTSSLIGT TGDGGSSAHE SGGSGGGSGE GLMGSQPNIV ATSVMTATID SAVLGDDDKN  60
RSGGELFEGD RSTGGNRWPR QETLALLKIR SDMDVVFRDS SLKGPLWEEV SRKMAELGYH  120
RSAKKCKEKF ENVYKYHKRT KDGRVGKSDG KTYRFFDQLE ALEQHHLSMS MMTTSSLPPL  180
PLAQPSPQAT ATPRGQTQAA AQAAVPVTMV IPAGTSINPA NVTVPSSPHP ISVVHTTSIN  240
PPPQHQSINV NPVNQESHPP LQQHPSPQVL QHQHQHQQQQ QTMGIPTHGS IQMENLSSPS  300
ATQSSSSSTS SDEELMGRRK RKRKWKDFFE RLMKEVIDKQ EELQKRFLEA VEKREHDRVV  360
REEAWKMQEM NRLNREHEIL VQERSMAAAK DAALIAFLQK LSDQQQIPLP SPVQDQAQPQ  420
PKAQVQAAQV RTAATVTPIA QPQPQVLQQP QSQPQPQPQQ QPQHQPQPQI NVSDSPISLP  480
SPTQPQPQPQ PLPQPQSQPI TQLPQQPAPQ LQQALVVSSI NNNGGNVDLQ KTNNGDNLLQ  540
ASSSRWPKAE VQALINLRTN LDQKYQENGP KGPLWEEISA AMRKHGYNRN AKRCKEKWEN  600
INKYFKKVKE SNKKRPEDSK TCPYFHQLDA LYRERNKMEI NSIPTINTST TPTITAYGQP  660
QHETSMAPII AQPEQQWPLQ SHPEQAMEDQ GSENQDDSED DDMDEEDDDD QGSGYEIVAN  720
NNVNAGSMTT TTTSTRTATA E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322RRKRKR
2317323RRKRKRK
3318323RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680658.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391177e-82TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0K9RCU70.0A0A0K9RCU7_SPIOL; Uncharacterized protein
STRINGXP_010680658.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-57Trihelix family protein