PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_010140_fqsf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25255.3 Da    PI: 6.5258
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_010140_fqsf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.4e-27958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvt+skR+ngi+KKA E+ vLCda+v+v+if+++gk++ y 
  Bv1_010140_fqsf.t1  9 KRIENSTNRQVTYSKRKNGIIKKATEITVLCDAKVSVVIFANNGKMHAYN 58
                        79*********************************************996 PP
2K-box78.81.3e-2671169199
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yq++sg+ l++ak+e+l++e++++kke++ ++ e+Rhl Ged++sL++ +Lq+Le++Le+++++iR+++ e+ ++  +++++ e+e+ + n
  Bv1_010140_fqsf.t1  71 YQNKSGTFLWDAKHENLKNEIDRIKKENDDMRIELRHLSGEDIGSLQYPDLQRLEDALENGVSSIRDRQAEIHKMLEKNQRMLEEENYQLN 161
                         78999999*********************************************************************************** PP

               K-box  92 kaLrkkle 99 
                          +L+k+ +
  Bv1_010140_fqsf.t1 162 YMLHKQEN 169
                         ****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.09161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.81E-36280No hitNo description
SuperFamilySSF554552.09E-34296IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.4E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1983164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.46284170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRKNGIIK KATEITVLCD AKVSVVIFAN NGKMHAYNSP  60
STSVEDILNE YQNKSGTFLW DAKHENLKNE IDRIKKENDD MRIELRHLSG EDIGSLQYPD  120
LQRLEDALEN GVSSIRDRQA EIHKMLEKNQ RMLEEENYQL NYMLHKQENE LMDGGSISRA  180
EMDGGVRNIP QDQRDYNYHN PFGFRVQPMQ PNLQDRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15175173MEF2 CHIMERA
6byy_B1e-15175173MEF2 CHIMERA
6byy_C1e-15175173MEF2 CHIMERA
6byy_D1e-15175173MEF2 CHIMERA
6bz1_A1e-15175173MEF2 CHIMERA
6bz1_B1e-15175173MEF2 CHIMERA
6bz1_C1e-15175173MEF2 CHIMERA
6bz1_D1e-15175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677653.11e-161PREDICTED: floral homeotic protein PMADS 2 isoform X1
SwissprotQ0HA253e-95MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLQ413531e-104Q41353_SILLA; SLM2 protein
STRINGXP_010677653.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]