PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_006470_ucuy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 269aa    MW: 28932 Da    PI: 5.6475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_006470_ucuy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-184190255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++aa++kl+g
  Bv1_006470_ucuy.t1 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSHEAALAYDAAARKLYG 90
                        69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-2140100No hitNo description
PfamPF008471.2E-134190IPR001471AP2/ERF domain
PROSITE profilePS5103222.2474198IPR001471AP2/ERF domain
SMARTSM003806.1E-3641104IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-214198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-304199IPR001471AP2/ERF domain
PRINTSPR003672.1E-94253IPR001471AP2/ERF domain
PRINTSPR003672.1E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MLKSKLGLGE KKQGKKHQVC HASSRKGCMR GKGGPENALC TYKGVRQRTW GKWVAEIREP  60
NRGARLWLGT FNTSHEAALA YDAAARKLYG SDAKLNLPEL YPPQLPSMTQ VQVQAQAQAK  120
AAQAQAQAQA QAQAQAQAQA QAQAQAQAQI PCYQNGYNAG CSSDNSSLSG ASDISFPTEE  180
TNSISTNTDS ATTSSESFGE NEVGINHGLW ENPNPSLPEL DDTLWAETAM TLGFPPSVIE  240
PQPEFLLSDG HGLLSGNLCD DSFQFLWSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-184298360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674522.11e-154PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A0K9QZD91e-128A0A0K9QZD9_SPIOL; Uncharacterized protein
STRINGXP_010674522.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.19e-40ERF family protein