PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_006310_qmia.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SRS
Protein Properties Length: 256aa    MW: 27638.7 Da    PI: 9.1803
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_006310_qmia.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.95.6e-6811646154
              DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...............ksk 81 
                         ++CqdCGnqakkdC h RCRtCCksrgf+C thvkstWvpaakrrerqqql+a++ +++++++++++++++++               +++
  Bv1_006310_qmia.t1   1 MNCQDCGNQAKKDCIHFRCRTCCKSRGFECPTHVKSTWVPAAKRRERQQQLTALQLQQQQQQQQQNQQQQQQNpqimrsarfgaekrtRQN 91 
                         68***************************************************99988888866666655555567777777776553333 PP

              DUF702  82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         ++++++  +++++ +++ le+ ++P+ev+s+avfrcvrvs++dd +e++aYqt v+igGh fkGiLydqG+e+
  Bv1_006310_qmia.t1  92 RTTSSHILTTTTNAPTSGLEVGNFPPEVNSPAVFRCVRVSAMDDPDEQFAYQTGVNIGGHFFKGILYDQGPEA 164
                         33444444444445556677777************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.2E-661163IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-27244IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.1E-25115162IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNCQDCGNQA KKDCIHFRCR TCCKSRGFEC PTHVKSTWVP AAKRRERQQQ LTALQLQQQQ  60
QQQQQNQQQQ QQNPQIMRSA RFGAEKRTRQ NRTTSSHILT TTTNAPTSGL EVGNFPPEVN  120
SPAVFRCVRV SAMDDPDEQF AYQTGVNIGG HFFKGILYDQ GPEARYGGSG SGGGGGGGES  180
SSGGRPQRHN LMLTRATTTS DLMGTVGGGS IDHTTPTTAT ATASLLDPMG AGGNSIYPTP  240
INAFLAGTQF FPPPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672367.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD406e-69SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A0K9R9411e-100A0A0K9R941_SPIOL; Uncharacterized protein
STRINGXP_010672367.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.18e-60Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]