PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_006310_qmia.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | SRS | ||||||||
Protein Properties | Length: 256aa MW: 27638.7 Da PI: 9.1803 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 219.9 | 5.6e-68 | 1 | 164 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...............ksk 81 ++CqdCGnqakkdC h RCRtCCksrgf+C thvkstWvpaakrrerqqql+a++ +++++++++++++++++ +++ Bv1_006310_qmia.t1 1 MNCQDCGNQAKKDCIHFRCRTCCKSRGFECPTHVKSTWVPAAKRRERQQQLTALQLQQQQQQQQQNQQQQQQNpqimrsarfgaekrtRQN 91 68***************************************************99988888866666655555567777777776553333 PP DUF702 82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ +++++ +++ le+ ++P+ev+s+avfrcvrvs++dd +e++aYqt v+igGh fkGiLydqG+e+ Bv1_006310_qmia.t1 92 RTTSSHILTTTTNAPTSGLEVGNFPPEVNSPAVFRCVRVSAMDDPDEQFAYQTGVNIGGHFFKGILYDQGPEA 164 33444444444445556677777************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.2E-66 | 1 | 163 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.0E-27 | 2 | 44 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.1E-25 | 115 | 162 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MNCQDCGNQA KKDCIHFRCR TCCKSRGFEC PTHVKSTWVP AAKRRERQQQ LTALQLQQQQ 60 QQQQQNQQQQ QQNPQIMRSA RFGAEKRTRQ NRTTSSHILT TTTNAPTSGL EVGNFPPEVN 120 SPAVFRCVRV SAMDDPDEQF AYQTGVNIGG HFFKGILYDQ GPEARYGGSG SGGGGGGGES 180 SSGGRPQRHN LMLTRATTTS DLMGTVGGGS IDHTTPTTAT ATASLLDPMG AGGNSIYPTP 240 INAFLAGTQF FPPPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00613 | PBM | Transfer from AT3G51060 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672367.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9SD40 | 6e-69 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0K9R941 | 1e-100 | A0A0K9R941_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672367.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 8e-60 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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