PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_005970_qxpi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 303aa    MW: 34114.4 Da    PI: 5.8822
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_005970_qxpi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.58.5e-201461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WTteEdellv++++q+G g+W++ ++  g+ R++k+c++rw +yl
  Bv1_005970_qxpi.t1 14 KGPWTTEEDELLVKYINQHGHGNWRSLPKNAGLLRCGKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding53.36.6e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  Bv1_005970_qxpi.t1  67 RGPFTPEEEKLVIQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.153961IPR017930Myb domain
SuperFamilySSF466899.9E-3211108IPR009057Homeodomain-like
SMARTSM007171.0E-151363IPR001005SANT/Myb domain
PfamPF002493.0E-171461IPR001005SANT/Myb domain
CDDcd001671.57E-121661No hitNo description
PROSITE profilePS5129426.25162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2765117IPR009057Homeodomain-like
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002495.3E-1667112IPR001005SANT/Myb domain
CDDcd001679.68E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRSPCCDKL GLKKGPWTTE EDELLVKYIN QHGHGNWRSL PKNAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEEKLVIQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLRKRLVCMG  120
LDPQTHEPSP TSSGPTTKYP ASPSTRHKAQ WESARLEAEA RLSSESLLCN SHSSEILDSD  180
HFLRLWNSEV GESFRKFEMK ETIACQSPIS QASTSTTKCA STSGLTMDNQ EEEIVFKDLI  240
KTEIVDVNTR SDSSSSNEVE DSSESALQLL LDFPGSNDMS FLEDPVDGYS IFPWMMNPLL  300
NIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672001.10.0PREDICTED: myb-related protein Myb4
SwissprotQ9M2D91e-124MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0K9QL051e-171A0A0K9QL05_SPIOL; Uncharacterized protein
STRINGXP_010672001.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111myb domain protein 17