PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_005280_nyko.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 31466.1 Da PI: 6.5167 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.5 | 1.1e-11 | 10 | 55 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g W++e d+ + +a++ ++ + +W++Ia+ ++ g+t +++++++ Bv1_005280_nyko.t1 10 GFWSKEQDKAFENAIATHPEDledRWEKIAADVP-GKTVEEVQHHYE 55 67********************************.**********96 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 5.8e-14 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Bv1_005280_nyko.t1 121 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.725 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 1.6E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 9 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.42E-11 | 10 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.36E-10 | 12 | 58 | No hit | No description |
Pfam | PF00249 | 1.8E-9 | 12 | 55 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.61 | 113 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.28E-17 | 116 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-17 | 118 | 168 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.5E-11 | 118 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-10 | 121 | 166 | No hit | No description |
Pfam | PF00249 | 7.3E-12 | 121 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-11 | 121 | 164 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MTVDEKGDGG FWSKEQDKAF ENAIATHPED LEDRWEKIAA DVPGKTVEEV QHHYELLVED 60 LQQIESGRVP LPSYSSSSEG SSSLAAEDGN GKMGQFANAG TESNHGNKAS KADQERRKGI 120 AWTEDEHRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS 180 IHDITSVNTG DLSAAQGPIT GQTNAAASGV PSGKSEKQAA QPLASPTGVG VYGTPTIGQP 240 IGGPLVSAVG TPVNLPAPPH MAYGVRVPVP GSVVPGAPMG MAPMTYPMPH TSAHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-19 | 6 | 77 | 5 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010671196.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010671200.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010671206.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010671218.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_010671224.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_019103797.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 1e-123 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2I4DKY9 | 1e-164 | A0A2I4DKY9_JUGRE; transcription factor DIVARICATA-like | ||||
STRING | XP_010671196.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-104 | MYB family protein |
Publications ? help Back to Top | |||
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