PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_005280_nyko.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 295aa    MW: 31466.1 Da    PI: 6.5167
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_005280_nyko.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-111055245
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        g W++e d+ + +a++ ++ +   +W++Ia+ ++ g+t +++++++ 
  Bv1_005280_nyko.t1 10 GFWSKEQDKAFENAIATHPEDledRWEKIAADVP-GKTVEEVQHHYE 55
                        67********************************.**********96 PP

2Myb_DNA-binding43.85.8e-14121165347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Bv1_005280_nyko.t1 121 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                         6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.725762IPR017884SANT domain
SMARTSM007171.6E-9860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5956IPR009057Homeodomain-like
SuperFamilySSF466894.42E-111066IPR009057Homeodomain-like
CDDcd001673.36E-101258No hitNo description
PfamPF002491.8E-91255IPR001005SANT/Myb domain
PROSITE profilePS5129417.61113170IPR017930Myb domain
SuperFamilySSF466898.28E-17116171IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17118168IPR006447Myb domain, plants
SMARTSM007174.5E-11118168IPR001005SANT/Myb domain
CDDcd001671.28E-10121166No hitNo description
PfamPF002497.3E-12121165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-11121164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTVDEKGDGG FWSKEQDKAF ENAIATHPED LEDRWEKIAA DVPGKTVEEV QHHYELLVED  60
LQQIESGRVP LPSYSSSSEG SSSLAAEDGN GKMGQFANAG TESNHGNKAS KADQERRKGI  120
AWTEDEHRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVNTG DLSAAQGPIT GQTNAAASGV PSGKSEKQAA QPLASPTGVG VYGTPTIGQP  240
IGGPLVSAVG TPVNLPAPPH MAYGVRVPVP GSVVPGAPMG MAPMTYPMPH TSAHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-19677576RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671196.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010671200.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010671206.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010671218.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_010671224.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_019103797.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-123SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2I4DKY91e-164A0A2I4DKY9_JUGRE; transcription factor DIVARICATA-like
STRINGXP_010671196.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-104MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]