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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Bv1_005060_wsok.t1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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| Family |
BBR-BPC |
| Protein Properties |
Length: 334aa MW: 37340.2 Da PI: 9.7539 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bv1_005060_wsok.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 382.1 | 9.1e-117 | 1 | 334 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa...aslkenlg.lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84
mdd g+re r+k+ +y+p +++ ++ +++ms++aerda+i+ern+a+ ek++a+ erd a +qrd+a++ern+al+erdn+l+al
Bv1_005060_wsok.t1 1 MDDAGHREngRHKPeMYKPPhsqWLMQQPQSmKHIMSIMAERDAAIQERNMAINEKNKALEERDLAIMQRDTAMQERNEALMERDNALAAL 91
9*****999*****99995544333444444157********************************************************* PP
GAGA_bind 85 llvensla....salpvgvqvlsgtksidslqq.lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
++++ns++ +++p+g+q+++g+k++++ qq +++p++++ +++ re + +alp++ ++e+ +++k+k +pke++a++++kk
Bv1_005060_wsok.t1 92 QFRQNSINgggsNTCPPGCQISRGVKHMHHPQQhVQHPHVGEASYDGREVQVPDALPLTAVPPESAKSRKVK------RPKEPNATSPNKK 176
******9999999********************7889**************999999999888887777666......8888888889888 PP
GAGA_bind 171 sekskkkvkkesader...........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234
++k+ +k k+e++d + k ++k dl+ln+v++Dest+P+PvCsCtG+ rqCYkWGnGGWqS+C
Bv1_005060_wsok.t1 177 TSKNGRKGKREGEDLNkimfsksqewkgmqdmdgsdgykqlggPKPDWKGPDLGLNQVAFDESTMPPPVCSCTGVYRQCYKWGNGGWQSSC 267
8899999999998844599999999****************************************************************** PP
GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
Cttt+SvyPLP+++++r+aR++grKmS++af+klL++Laa+G+dls+pvDLkdhWAkHGtn+++tir
Bv1_005060_wsok.t1 268 CTTTMSVYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAADGHDLSTPVDLKDHWAKHGTNRYITIR 334
******************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MDDAGHRENG RHKPEMYKPP HSQWLMQQPQ SMKHIMSIMA ERDAAIQERN MAINEKNKAL 60
EERDLAIMQR DTAMQERNEA LMERDNALAA LQFRQNSING GGSNTCPPGC QISRGVKHMH 120
HPQQHVQHPH VGEASYDGRE VQVPDALPLT AVPPESAKSR KVKRPKEPNA TSPNKKTSKN 180
GRKGKREGED LNKIMFSKSQ EWKGMQDMDG SDGYKQLGGP KPDWKGPDLG LNQVAFDEST 240
MPPPVCSCTG VYRQCYKWGN GGWQSSCCTT TMSVYPLPAV PNKRHARVGG RKMSGSAFSK 300
LLSRLAADGH DLSTPVDLKD HWAKHGTNRY ITIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
