PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_004090_exom.t2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 313aa MW: 34776.9 Da PI: 8.7534 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Bv1_004090_exom.t2 55 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 99 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-17 | 49 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 50 | 104 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-18 | 53 | 102 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.0E-6 | 53 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-11 | 55 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-8 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MQSQELDLDF SSGFPLTGVN SSPPVKSPVS GQSVIPSVED HCKKVRKPYT ITKSRESWTE 60 QEHDKFLEAL QLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKVQKNGSNE RVPPARPKRK 120 AAHPYPQKAS KIAPAANQFT GHVYNHDPSS VLTNQSGSTP TSSWTFGSMP ADNSSNMKRD 180 DAALPMSSIA HNSYCSSSNE SGSPWPTTGA FDPTNQAERI KVAPDFAQVY SFIGSVFDPN 240 TRDHLQRLKA MDPINVETVL LLMRNLSVNL LSPEFEEHRK LFASYDQESG KSRSCSSLLP 300 APDDSKNAMH AVY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ752587 | 1e-116 | FJ752587.1 Beta vulgaris clone BAC ZR-47B15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010669883.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Swissprot | Q8H0W3 | 2e-89 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0K9QSI3 | 1e-163 | A0A0K9QSI3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010669883.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 2e-72 | MYB_related family protein |
Publications ? help Back to Top | |||
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