PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_004090_exom.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 310aa    MW: 34537.6 Da    PI: 8.7534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_004090_exom.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-135599147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Bv1_004090_exom.t1 55 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 99
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1749105IPR009057Homeodomain-like
PROSITE profilePS5129415.40850104IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-653105IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1853102IPR006447Myb domain, plants
SMARTSM007175.3E-1154102IPR001005SANT/Myb domain
PfamPF002492.5E-115599IPR001005SANT/Myb domain
CDDcd001671.77E-857100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQSQELDLDF SSGFPLTGVN SSPPVKSPVS GQSVIPSVED HCKKVRKPYT ITKSRESWTE  60
QEHDKFLEAL QLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKVQKNGSNE RVPPARPKRK  120
AAHPYPQKAS KIANQFTGHV YNHDPSSVLT NQSGSTPTSS WTFGSMPADN SSNMKRDDAA  180
LPMSSIAHNS YCSSSNESGS PWPTTGAFDP TNQAERIKVA PDFAQVYSFI GSVFDPNTRD  240
HLQRLKAMDP INVETVLLLM RNLSVNLLSP EFEEHRKLFA SYDQESGKSR SCSSLLPAPD  300
DSKNAMHAVY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7525871e-116FJ752587.1 Beta vulgaris clone BAC ZR-47B15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669889.10.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W32e-90RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0K9QSI31e-162A0A0K9QSI3_SPIOL; Uncharacterized protein
STRINGXP_010669883.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-73MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]