PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_003640_tkfj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bZIP
Protein Properties Length: 420aa    MW: 44611.6 Da    PI: 6.5421
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_003640_tkfj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.22.8e-21276338163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+e+krerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN aLk+e+++  ++++kl+ e+
  Bv1_003640_tkfj.t1 276 EREIKRERRKQSNRESARRSRLRKQAETEELARKVEALSAENIALKSEINQVVENSQKLRLEN 338
                         89*********************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.9E-34193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.6E-21130251No hitNo description
Gene3DG3DSA:1.20.5.1704.3E-16272335No hitNo description
PfamPF001708.4E-20276338IPR004827Basic-leucine zipper domain
SMARTSM003385.3E-19276340IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.633278341IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-10279334No hitNo description
CDDcd147023.33E-20281335No hitNo description
PROSITE patternPS000360283298IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGSSEDGKSS KSDKSSPIAT EQNTVHVYPD WAAMQAYYGP RVALPPYFNS AVAPGHPPPP  60
YMWGPPQPMV PPYGAPYAAI YAPGGVYAHP AIPLGSQAPG QAAAPLAVTE PLVATPLSMD  120
TPVKTPRDGE KGLIKKLKGF DGLAMSIGNG NTEKEGDDEN RLSHSAETEG SSNGSVGNTE  180
EADHNKRKRS REGTPTDVED EKTDIKAVLP PADNALGIPL TPANVAGQVV GTVVSSGVAT  240
TLELRNPGVS VKANSANVSP SNTVMSSEPW LQVQNEREIK RERRKQSNRE SARRSRLRKQ  300
AETEELARKV EALSAENIAL KSEINQVVEN SQKLRLENDT LTAKLKSVQS GQGNENGLPN  360
VDTKRNPTDS TENLLSRVNN SGSVGRIADE SADMYGKGAK SGAKFHQLLD NPRADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292298RRSRLRK
2292299RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669464.10.0PREDICTED: common plant regulatory factor 1 isoform X1
RefseqXP_010669480.10.0PREDICTED: common plant regulatory factor 1 isoform X1
SwissprotQ990891e-131CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A0K9QNP90.0A0A0K9QNP9_SPIOL; Uncharacterized protein
STRINGXP_010669464.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-90G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]