PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_002880_qzmp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 668aa    MW: 74885.2 Da    PI: 6.6718
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_002880_qzmp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23126226198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+lt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD +vF   +
  Bv1_002880_qzmp.t1 126 FCKILTASDTSTHGGFSVLRKHANEClppldMSQTTPTQELVARDLHGYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 214
                         99****************************9666677789************************************************..5 PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                         ++++ l+v+v+r
  Bv1_002880_qzmp.t1 215 DDKGDLRVGVRR 226
                         578889***998 PP
2Auxin_resp102.45.8e-34252331183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a ha++t+++F+v+Y+Pr+  s+F+v v+k+++a+++++s+GmRf m+fe++d +err++Gt+vgv+d+ p +W++SkWrsLk
  Bv1_002880_qzmp.t1 252 ARHAVNTSTMFTVYYKPRS--SQFIVGVKKFLEAVNHRFSIGMRFNMRFEGDDTPERRFTGTIVGVEDVCP-HWSGSKWRSLK 331
                         679***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.41E-41115255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-19124226No hitNo description
PROSITE profilePS5086311.871126228IPR003340B3 DNA binding domain
PfamPF023622.8E-21126226IPR003340B3 DNA binding domain
SMARTSM010192.6E-21126228IPR003340B3 DNA binding domain
PfamPF065073.1E-31252331IPR010525Auxin response factor
PfamPF023092.8E-13534636IPR033389AUX/IAA domain
SuperFamilySSF542772.26E-14546628No hitNo description
PROSITE profilePS5174528.948552644IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAQCQRTHSN ERLTGGESYA LYAELWRACA GPLVDVPQSG ERVFYFPQGH MEQLEASTNQ  60
ELNHQIPRFN LPPKILCHVM NIELKAELET DEVYAQITLI PEKDQDEFKG SDSCLPEPPR  120
PKVHSFCKIL TASDTSTHGG FSVLRKHANE CLPPLDMSQT TPTQELVARD LHGYEWHFKH  180
IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRDDKGDL RVGVRRLVRQ QAPMPSSVIS  240
SQSMHLGVLA TARHAVNTST MFTVYYKPRS SQFIVGVKKF LEAVNHRFSI GMRFNMRFEG  300
DDTPERRFTG TIVGVEDVCP HWSGSKWRSL KVQWDEAATF QRPDKVSPWE IEPFSASIPV  360
NPTPPPISKT KRSRPSDLSI SETTGVSAGS NFWYGPAHTQ DFCSPGNQQD NIWTPTHGRN  420
SFRFFADNKD ESKTSSVQSC STPSAFSCLV VPTKLSSDHP EQVNNGGKSA GGIRLFGFEL  480
RNSSHIVPTL EKMTACPENL LDGDKILETS ARKSDEVQNT EVGEALKEQN QANSDSSLRE  540
SQTKQSSQSS TRSRTKVHMQ GVAVGRAVDL TILEGYDELI SELERMFDIK GELQTRNKWA  600
VVFTDDEGDM MLVGDDPWQE FCKMVRKICI YSSEEVKKVS CNKRLSSLST DEGTVLSLGT  660
EQKSEACD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16783566357Auxin response factor 1
4ldw_A1e-16783566357Auxin response factor 1
4ldw_B1e-16783566357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696146.10.0PREDICTED: auxin response factor 18
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A0K9QU550.0A0A0K9QU55_SPIOL; Auxin response factor
STRINGXP_010696146.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]