PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_002740_dwki.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 335aa    MW: 38296.7 Da    PI: 7.2702
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_002740_dwki.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Bv1_002740_dwki.t1 14 RGPWTAREDVLLIKYIEAHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding51.32.7e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Bv1_002740_dwki.t1  67 RGNITPDEDDLIIRLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                         7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.436961IPR017930Myb domain
SuperFamilySSF466898.79E-3011108IPR009057Homeodomain-like
SMARTSM007174.0E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-231568IPR009057Homeodomain-like
CDDcd001679.73E-101661No hitNo description
PROSITE profilePS5129426.91662116IPR017930Myb domain
SMARTSM007177.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2669116IPR009057Homeodomain-like
CDDcd001676.15E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTAR EDVLLIKYIE AHGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHGLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRSQG  120
TDPNTHKKLS ESELEKLAKN NYNKKRCKSS IDDNNNNKHT NYRSIRSKKL SDEVGEKTKI  180
HLPKPVRVKS VISLTRNNSD RSLETNNNNV STTSASSSQT QTLNQNYGLT TYDSENNIIM  240
PWMENHASMG TNGFDDHMMM TIGSSYGDHD VNIDTMQPHH EVVAPDNNQQ LEKLYEEYLQ  300
LIKVDHDHHY HDGDGDDDDV DGEAQLDSFT ESFLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695048.10.0PREDICTED: myb-related protein 308
TrEMBLA0A061DUF41e-109A0A061DUF4_THECC; Myb domain protein 7, putative
STRINGXP_010695048.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-70myb domain protein 5