PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_001980_txmr.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | MYB_related | ||||||||
Protein Properties | Length: 735aa MW: 80394.2 Da PI: 6.3232 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Bv1_001980_txmr.t1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.91E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.0E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MDNYSSGEEP IVKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALVKG VPIAQAIDIE IPPPRPKRKP SNPYPRKTGS ISSPNTQVST 120 KDGKQIPHTH ATEQVVDLEK EQLLEKSGCD DGDSNPDETD GGDKCTEAFT LFKEKPSALG 180 VPSSEFPSTT VGSARKLSNF KEFMPMKKPV NDDTGGFDAA DVHNRNQKPE KPDVVEMVQN 240 DSENEKNAAK TFPKHAPVQI LDGSLVSCSQ GLSSDVSYQE PVFHQMGIPS LPALFSNPTV 300 SAAVESQTST SRSTNHQMFP SFHPPFSPYP NTQEDYSSFL QMSSTFSSMI ISALLQNPGA 360 HAAATFAASF WPCGNLENSA NSPAVSSGGL PPRPMNPAPS VAAIAAATVA AATAWWAAHG 420 LLPLCAPLHA GYSFPPASGT TPLANVSQTQ VANEEKEEKN FQRHGSQVQQ PNQELSEALH 480 QEHLASKSSA ASSSDSGNTS SAKMDTGVAA NNNENKIPAS SELKDTSKGK SKKQVDRSSC 540 GSNTPSGSDI ETDALGKNDK VEEEAKEPDI NRPTSEPNSR RNRVVCNIYD SWKEVSEGGR 600 LAFQALFSRE VLPQSFSPPQ NGNVEMLDKK LCIEGNRQIV ERSNDVSQLD LNSNTWESCS 660 VNQGIEKNDT RQEDSCKNGL LIFSYEQGKL KTNRTGFKPY KRCSMEARES RVMNSSAPEQ 720 EKCSKRLRLE GEASI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010687317.1 | 0.0 | PREDICTED: protein LHY isoform X1 | ||||
Refseq | XP_019106653.1 | 0.0 | PREDICTED: protein LHY isoform X1 | ||||
TrEMBL | A0A0K9QPN9 | 0.0 | A0A0K9QPN9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687317.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-106 | MYB_related family protein |