PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_001760_owzx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 316aa    MW: 35825.6 Da    PI: 5.2663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_001760_owzx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.7e-151663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++ Ed +l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Bv1_001760_owzx.t1 16 KGPWSQAEDYKLISFIRKHGHNNWRALPKLAGLARCGKSCRLRWVNYL 63
                        79********************************************97 PP
2Myb_DNA-binding50.35.6e-1669114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T +E+e +++++++lG++ W++Ia+ ++ gRt++++k+ w+++l
  Bv1_001760_owzx.t1  69 RGNFTLQEEESIIKLHEMLGNK-WSKIASQFP-GRTDNEIKNVWNTHL 114
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.8761163IPR017930Myb domain
SuperFamilySSF466891.55E-2913110IPR009057Homeodomain-like
SMARTSM007173.9E-121565IPR001005SANT/Myb domain
PfamPF002495.9E-141663IPR001005SANT/Myb domain
CDDcd001673.05E-91863No hitNo description
PROSITE profilePS5129424.19964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2667119IPR009057Homeodomain-like
SMARTSM007171.2E-1368116IPR001005SANT/Myb domain
PfamPF002491.2E-1469114IPR001005SANT/Myb domain
CDDcd001671.27E-871114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGKGRRPCCD KAGVKKGPWS QAEDYKLISF IRKHGHNNWR ALPKLAGLAR CGKSCRLRWV  60
NYLRPDLKRG NFTLQEEESI IKLHEMLGNK WSKIASQFPG RTDNEIKNVW NTHLKKRLKE  120
RGLTSNENTT LSSSSSSCNT SSIDTTSPNK ILDERNKLDC TEQVLMHQTT NNSDTIEYSS  180
SSSASYSSQS SISDNQITDD LNPNTIENAG EHRDETSMCK DNNNENSLDE LLEIPFEPNL  240
DLWDLLHGGD SEVQFVDTPI ISDNDMKIEN TKESGKSWWW LVYLENELGL DHQNEFTPLQ  300
STNGTSSHDL LSDISI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26161187108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684846.10.0PREDICTED: myb-related protein 308
TrEMBLA0A0K9QIB31e-125A0A0K9QIB3_SPIOL; Uncharacterized protein
STRINGXP_010684846.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-67myb domain protein 63