PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_001260_iquc.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 341aa    MW: 37759.4 Da    PI: 9.1338
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_001260_iquc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
  Bv1_001260_iquc.t1 14 KGAWTKDEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP

2Myb_DNA-binding59.57.2e-1967111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Bv1_001260_iquc.t1  67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.995961IPR017930Myb domain
SuperFamilySSF466892.85E-2913108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
CDDcd001677.19E-111661No hitNo description
PROSITE profilePS5129429.42762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2865116IPR009057Homeodomain-like
SMARTSM007174.6E-1866114IPR001005SANT/Myb domain
PfamPF002494.8E-1767111IPR001005SANT/Myb domain
CDDcd001672.49E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKD EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG  120
LDPQTHRPLN STTVSGGAAA TIVAGKNSPE ILGFAVNPAI MVTQFGAISQ TIDFKKNSYP  180
DMNNSNNNNN NNNNNNNNNK VKSESCHSGT TTDEGQMGRI PGQQQKAQED INLELSIGLS  240
KFQGEARNST ASSAESRDVG PSPSPSPSPS PFELFDKHKP MKKGMLLLSS YEGQNREICS  300
CCELGFQMNN INNGNKVKEG CSNCQIKGGY FYSRYIGTLG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680433.10.0PREDICTED: transcription repressor MYB6
SwissprotQ388514e-89MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A0K9QYS81e-160A0A0K9QYS8_SPIOL; Uncharacterized protein
STRINGXP_010680433.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-91myb domain protein 3