PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_000760_ymmj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 459aa    MW: 52261.7 Da    PI: 6.7992
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_000760_ymmj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.13.3e-93794561374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl +A+ +++++ + a  ++++l   +s +gd+ qR+aayft +L arl+ + s  y+ + +++t+    +ee++a++ ++ vsP++
  Bv1_000760_ymmj.t1  79 LIHLLLVAATLIKEHNISSAADTVTELYRYVSVTGDSGQRVAAYFTDGLTARLLTQKSAFYNMVMSKPTA----AEEFMAFTHLYRVSPFY 165
                         689****************************************************999999988888885....8999************* PP

                GRAS  92 kfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeel.g 173
                         +f+++taNqaIlea+e+e       +H+iDfdis+G+QWp+L+q+L++++   +   slRiTg+++    s eel  t++rL +f + + +
  Bv1_000760_ymmj.t1 166 QFAQFTANQAILEAFEREeennnWVLHVIDFDISYGFQWPSLMQSLSEKAtasDRLISLRITGLAK----SLEELIDTENRLVSFSKGFqN 252
                         ****************9966553345***********************954333459********....9****************9857 PP

                GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                         ++fef+ l    l   +l +L+ +++E++aVnlv++l +l  + +++    +e+++ +k l+P +vv+ve+e + ns   l   +++l+yy
  Bv1_000760_ymmj.t1 253 INFEFHGL----LRGSNLINLEKRKNETVAVNLVFHLSSLS-DILKI----SETVSSIKLLNPSIVVLVEREGSQNSCGILSSYVDSLHYY 334
                         *******8....66677789999**************9997.44444....45************************************** PP

                GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk....vk.sdg.. 348
                         +a+fdsl+  lp +s er ++E+  lgrei++++a e+ +   r e +e+W+er+ + GF  ++ls+k+  qaklll++    ++ ++g  
  Bv1_000760_ymmj.t1 335 AAMFDSLDDRLPLDSTERLSIEKNHLGREIKDLIASEEMK-CSRFEMMETWKERMVSHGFFGIELSSKVSIQAKLLLKMgchyHPhFEGes 424
                         *************************************998.9***********************************97543311222222 PP

                GRAS 349 ....yrveee.sgslv.lgWkdrpLvsvSaWr 374
                             +rv e+ +g  + lgW+dr L+++SaWr
  Bv1_000760_ymmj.t1 425 ggagFRVCERhEGRGIsLGWQDRFLITASAWR 456
                         33447776554555556**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.30653423IPR005202Transcription factor GRAS
PfamPF035141.1E-9079456IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
METINKNEDV LSLSLAITNH TNHVERKMKR RRINETHPVI KSAENWEAKI FRLLEERHKM  60
LNIALQGKRV VEEGSGLHLI HLLLVAATLI KEHNISSAAD TVTELYRYVS VTGDSGQRVA  120
AYFTDGLTAR LLTQKSAFYN MVMSKPTAAE EFMAFTHLYR VSPFYQFAQF TANQAILEAF  180
EREEENNNWV LHVIDFDISY GFQWPSLMQS LSEKATASDR LISLRITGLA KSLEELIDTE  240
NRLVSFSKGF QNINFEFHGL LRGSNLINLE KRKNETVAVN LVFHLSSLSD ILKISETVSS  300
IKLLNPSIVV LVEREGSQNS CGILSSYVDS LHYYAAMFDS LDDRLPLDST ERLSIEKNHL  360
GREIKDLIAS EEMKCSRFEM METWKERMVS HGFFGIELSS KVSIQAKLLL KMGCHYHPHF  420
EGESGGAGFR VCERHEGRGI SLGWQDRFLI TASAWRCSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-50684558378Protein SCARECROW
5b3h_A9e-51684557377Protein SCARECROW
5b3h_D9e-51684557377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12832KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675505.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A0K9R7F10.0A0A0K9R7F1_SPIOL; Uncharacterized protein
STRINGXP_010675505.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.14e-57SCARECROW-like 21