PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.8705s0005.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 327aa    MW: 36914.8 Da    PI: 10.3086
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.8705s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.2e-1322822796
                         ---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3 27 ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                         g +  e kt  l++  s  +W+vk+  ++++    lt+GWkeF+ a++L+ gD+vvFk +++++f  +v++
  Bostr.8705s0005.1.p 22 GRN--ERKTAELRSdASKITWKVKI--DGQR----LTNGWKEFALAHDLRIGDIVVFKQVRDMTF--HVTM 82
                         444..34567776648889******..8888....***********************8887888..7765 PP
2B378.66.6e-25122207390
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           + +++++l+ + l lp +f++++g++++++ +++l++e+grsW+v l+ +k+  ++++++GW++F++ ngL++gD+++Fkl++r ++
  Bostr.8705s0005.1.p 122 VANVTPSSLRYDSLNLPMSFVRANGLDTRCG-EMILMNEKGRSWTVDLKRKKSCATTYIRRGWRSFCQTNGLRVGDSFTFKLIQR-GG 207
                          566889999999***************9987.****************87777777**************************996.33 PP
3B331.82.5e-102743205399
                          EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++ ++r+ l +GWkeF++ang+k g++++++l+++++++ v+k+++k
  Bostr.8705s0005.1.p 274 NGIKKRMRLVGGWKEFCNANGVKMGESIILELIWETDKSSVLKFCSK 320
                          5556788899*************************999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.025186IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-16392IPR015300DNA-binding pseudobarrel domain
CDDcd100174.65E-11583No hitNo description
SMARTSM010197.3E-14686IPR003340B3 DNA binding domain
PfamPF023621.1E-82180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-192397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-23114206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-22119217IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.454120217IPR003340B3 DNA binding domain
CDDcd100179.68E-24120213No hitNo description
SMARTSM010192.5E-29121217IPR003340B3 DNA binding domain
PfamPF023621.1E-23122208IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-4241279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-13244320IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-8248318No hitNo description
SMARTSM010192.0E-9249321IPR003340B3 DNA binding domain
PfamPF023626.7E-8279320IPR003340B3 DNA binding domain
PROSITE profilePS508638.078279320IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-8280320IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHSHLNI EGRNERKTAE LRSDASKITW KVKIDGQRLT NGWKEFALAH  60
DLRIGDIVVF KQVRDMTFHV TMLGPSCCEI QYVSCLNDQN NLGKIQRKKK KAESSLHLSC  120
FVANVTPSSL RYDSLNLPMS FVRANGLDTR CGEMILMNEK GRSWTVDLKR KKSCATTYIR  180
RGWRSFCQTN GLRVGDSFTF KLIQRGGTLG LRLSPRELEE EEEDCLSEAN AKKGKLISKA  240
SSSSSQNRFV TVTLTPYNIG QSKLDLPIPF AKVNGIKKRM RLVGGWKEFC NANGVKMGES  300
IILELIWETD KSSVLKFCSK VMPQPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.8705s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467375.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM41e-109REM14_ARATH; B3 domain-containing protein REM14
TrEMBLD7LE941e-176D7LE94_ARALL; Uncharacterized protein
STRINGBostr.8705s0005.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-105B3 family protein