PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7903s0128.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 371aa    MW: 41468.3 Da    PI: 5.441
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7903s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.82.4e-33203257155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r+rWtpeLHe Fveav+qLGGs+kAtPk +l++mkv+gLt++hvkSHLQkYR+
  Bostr.7903s0128.1.p 203 KGRMRWTPELHEVFVEAVNQLGGSNKATPKGVLKHMKVEGLTIYHVKSHLQKYRT 257
                          56****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.124200260IPR017930Myb domain
SuperFamilySSF466895.02E-18202257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-30202258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24203257IPR006447Myb domain, plants
PfamPF002491.9E-10205256IPR001005SANT/Myb domain
PfamPF143797.6E-22290335IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
METRPLRSIP RELSNLSHTS SLIPSLPNPS VTAEMSFNSE PNQLTARPYH LLSANGGSVG  60
HIYSSDLHNS FVPETSDWIP SPLPDIFNFP SGSPIQSSQM EDDVIVASDE IHKQSDWPVW  120
DDHLITDGDS LMSTVLEDLL LDTNFNSASK VQQPSMQSQI QQPQIVLQQP SPCVELRPLV  180
ETVSSNSNNN NNSSNSNNNA AGKGRMRWTP ELHEVFVEAV NQLGGSNKAT PKGVLKHMKV  240
EGLTIYHVKS HLQKYRTARY IPETSEAGSP ETKLTPPEQI TSVDTKRGID ITEALRLQME  300
VQKQLHEQLE IQRKMQLRIE EQGKALLMMF EKQNKGFGKS EQEDKTRAKT PENVSEESDS  360
PRSKRPRNEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-31202260159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-31202260159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-31202260159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-31202260159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-31202260159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-31202260159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-31202260159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-31202260159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00111ampDAPTransfer from AT2G20400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7903s0128.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467830.10.0PREDICTED: myb family transcription factor PHL4-like isoform X1
SwissprotQ8GXC21e-170PHL4_ARATH; Myb family transcription factor PHL4
TrEMBLD7L3M91e-179D7L3M9_ARALL; Uncharacterized protein
STRINGBostr.7903s0128.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20400.11e-154G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]