PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7867s1603.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 169aa MW: 19577.6 Da PI: 9.5572

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s1603.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.2	2.1e-18	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+ +r++ f+kR+ gilKKA+EL LCd+ va+++fs++ kl+ + Bostr.7867s1603.1.p 9 KKIEDRQQRNIAFAKRKSGILKKAYELYALCDVPVALVLFSPSRKLFIF 57 68******************************************99866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.095	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-21	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.15E-22	2	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.2E-19	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MGRVKIQMKK IEDRQQRNIA FAKRKSGILK KAYELYALCD VPVALVLFSP SRKLFIFDAK 60 TRLEETINKY VAQPCYKRPR DSLDDGEIED EIDKHKVELA EVERELGYFL KSPNQWESLA 120 ELQIIEKLHK MTLDKVQSRK KRFESKSKLI NVSGSPLQNS MEENSSVE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-17	1	94	1	90	MEF2C
5f28_B	1e-17	1	94	1	90	MEF2C
5f28_C	1e-17	1	94	1	90	MEF2C
5f28_D	1e-17	1	94	1	90	MEF2C
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s1603.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411890.2	4e-64	truncated transcription factor CAULIFLOWER D
TrEMBL	M4D5K6	1e-61	M4D5K6_BRARP; Uncharacterized protein
STRING	Bostr.7867s1603.1.p	1e-120	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-23	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Bostr.7867s1603.1.p