PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1585.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 321aa    MW: 34816.7 Da    PI: 7.4624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1585.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.31e-191459147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Bostr.7867s1585.1.p 14 KGPWSPEEDDLLQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 59
                         79******************************.***********985 PP
2Myb_DNA-binding543.7e-1768110347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++eEde +++a++++G++ W+tI+r ++ gRt++ +k++w++ 
  Bostr.7867s1585.1.p  68 AFSQEEDETIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 110
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.258964IPR017930Myb domain
SuperFamilySSF466892.26E-3112107IPR009057Homeodomain-like
SMARTSM007179.4E-181362IPR001005SANT/Myb domain
PfamPF002499.2E-201459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-261567IPR009057Homeodomain-like
CDDcd001675.98E-171658No hitNo description
SMARTSM007172.8E-1465113IPR001005SANT/Myb domain
PROSITE profilePS5129420.29366115IPR017930Myb domain
PfamPF002491.4E-1468110IPR001005SANT/Myb domain
CDDcd001671.63E-1168111No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2268114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSNSTTRKNT ERIKGPWSPE EDDLLQRLVQ KHGPRNWSLI SKSIPGRSGK SCRLRWCNQL  60
SPEVEHRAFS QEEDETIIRA HARFGNKWAT ISRLLNGRTD NAIKNHWNST LKRKCSVEGQ  120
SCDFGGNGGY DGNLGEEQPL KRTASGGGVS TGLYMSPGSP SGSDVSEQSS GQGQHVFKPT  180
VRSEVTASSP GEDPPTYLSL SLPWTETVRV NEAPQLNQNT VMDGGYTAEL FPVRKEEEVE  240
LEEEAKGISG GFGGEFMTVV QEMIRTEVRS YMADLQRGNV GGSGGGSGGG GGSCMPQSVN  300
SRRVGFREFI VNQIGIGKMK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-40911553159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-40911553159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1585.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615910.0AL161591.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87.
GenBankAY0639120.0AY063912.1 Arabidopsis thaliana putative myb-related protein (At4g37260) mRNA, complete cds.
GenBankAY0912670.0AY091267.1 Arabidopsis thaliana putative myb-related protein (At4g37260) mRNA, complete cds.
GenBankAY5196130.0AY519613.1 Arabidopsis thaliana MYB transcription factor (At4g37260) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997070.0Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286095.10.0transcription factor MYB73
SwissprotO231600.0MYB73_ARATH; Transcription factor MYB73
TrEMBLR0H6600.0R0H660_9BRAS; Uncharacterized protein
STRINGBostr.7867s1585.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.10.0myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]