PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s1581.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21292.5 Da PI: 8.2263 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.3e-18 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g Bostr.7867s1581.1.p 30 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 79 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.1E-39 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-9 | 31 | 42 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 31 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 31 | 88 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-12 | 31 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.66E-27 | 31 | 89 | No hit | No description |
PRINTS | PR00367 | 5.3E-9 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
METATEVATV VSTPAVTVTA AAATRKREKP YKGIRMRKWG KWVAEIREPN KRSRIWLGSY 60 STPEAAARAY DTAVFYLRGP SARLNFPELL AGVTVAGSGG GNGGGDMSAA YIRRKAAEVG 120 AQVDALEAAG GNRRHHQNQH QRGNHDYGDN HSDYRINDDH MECSSKEEFK RCNGSWERVD 180 LNKLPDPETS EDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 29 | 87 | 4 | 63 | ATERF1 |
3gcc_A | 1e-15 | 29 | 87 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00020 | PBM | Transfer from AT4G36900 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s1581.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF003103 | 0.0 | AF003103.1 Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial cds. | |||
GenBank | AJ002598 | 0.0 | AJ002598.1 Arabidopsis thaliana mRNA for TINY-like protein. | |||
GenBank | AL161590 | 0.0 | AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86. | |||
GenBank | BT020317 | 0.0 | BT020317.1 Arabidopsis thaliana At4g36900 gene, complete cds. | |||
GenBank | BT025757 | 0.0 | BT025757.1 Arabidopsis thaliana At4g36900 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z99707 | 0.0 | Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138483.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | Q9SW63 | 1e-103 | RA210_ARATH; Ethylene-responsive transcription factor RAP2-10 | ||||
TrEMBL | M4DMS6 | 1e-110 | M4DMS6_BRARP; Uncharacterized protein | ||||
STRING | Bostr.7867s1581.1.p | 1e-142 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36900.1 | 4e-88 | related to AP2 10 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s1581.1.p |
Publications ? help Back to Top | |||
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