PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s1579.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | AP2 | ||||||||
Protein Properties | Length: 438aa MW: 48311 Da PI: 7.1318 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.3e-17 | 136 | 185 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Bostr.7867s1579.1.p 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.2 | 9.9e-14 | 228 | 278 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Bostr.7867s1579.1.p 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 278 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-16 | 136 | 194 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-9 | 136 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 137 | 199 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 137 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.67E-11 | 137 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-17 | 137 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-17 | 228 | 288 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.78E-26 | 228 | 288 | No hit | No description |
Pfam | PF00847 | 2.7E-9 | 228 | 278 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.672 | 229 | 286 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-32 | 229 | 292 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-16 | 229 | 286 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 230 | 241 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 268 | 288 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MWDLNDSPHQ THREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE PNRVRPNNPL 60 VTHQFFPEMD SNGGEGDGGG GVGSGFPRAH WFGVKFCQSD LATGSSAGKP ATAAAAVVEP 120 AQPLKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA 180 IKFRGVEADI NFNIEDYDDD LKQMTNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR 240 WEARMGQFLG KKYVYLGLFD TEVEAARAYD KAAIKCNGKD AVTNFDPSIY DEELNAESSG 300 NPTPQDHNLD LSLGNSANSK QKSQDMRLKM TQQQQDLHPN EILGLGQTGM LNHIPNSNHQ 360 FPGSSNIGNR GGFSLFPVAE NHRFDGRPST NQVLTNAAAS SGFSPHHHNQ IFNSSSSTSH 420 QNWLQTNGFQ PPLMRPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s1579.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX041887 | 0.0 | JX041887.1 Brassica juncea cultivar Varuna AP2 variant 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190938.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Refseq | NP_195410.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | P47927 | 0.0 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A178UZG8 | 0.0 | A0A178UZG8_ARATH; FLO2 | ||||
STRING | Bostr.7867s1579.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s1579.1.p |