PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1527.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 485aa    MW: 53895.2 Da    PI: 4.9002
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1527.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.73.5e-1021214832374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++      +  p + +s+++ ++++ a k +s +sPi
  Bostr.7867s1527.1.p 121 IEDLIRVVDCVESDELQLAQVILSRLNQRlRSPAGRPLQRAAFYFKEALGSLLTG-----TNRNPIRLSSWSEIVQRIRAIKEYSGISPI 205
                          678*************************99*************************.....778899999999****************** PP

                 GRAS  91 lkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          + fsh+taNqaIl++++++     vH++Dfdi+ G+Q+++L++++a+++ +   lR+T+v+++e   + e++ ++e+L++fA+e++++f+
  Bostr.7867s1527.1.p 206 PLFSHFTANQAILDSLSSQsssPFVHVVDFDIGFGGQYASLMREIAEKSVSGGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQ 293
                          ****************99977789**************************************66..9*********************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
                          +++++ k++e+l+++++r+ +gE ++V ++ +++r l       s + ++++ ++++sPkvvv+v++e  ++  +s+sF ++f++ale+y
  Bostr.7867s1527.1.p 294 IEFVLLKTFEMLSFKAIRFVEGERTVVLISPAIFRRL-------SGIADFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFY 376
                          ************************************9.......34556*******************76677899************** PP

                 GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                          +++++sl+a +p+ +  ++ vE+++l+++i+ +v ++ ++   r++  ++Wre + +aG++p++ls++a  qa++ll+k +++g++v ++
  Bostr.7867s1527.1.p 377 TMVLESLDAAAPPGDLVKKIVEAFVLRPKICAAVETAADR---RNTGEMTWREPFCAAGMRPIQLSQFADYQAECLLEKAQVRGFHVAKR 463
                          ***********************************99998...89999****************************************** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +g+lvl+W++r+Lv++SaWr
  Bostr.7867s1527.1.p 464 QGELVLCWHGRALVATSAWR 483
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.07894463IPR005202Transcription factor GRAS
PfamPF035141.2E-99121483IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MKIPASSPQD TTNNNTNSTD SNHLSMDEHV MRSMDWDSIM KELELDDDSA PNSLKTGFTT  60
TTTDSTILPL YAVDSNLPGF PDQIQPSDFE SSTDVYPGQN QTTGYGFNPL ESVDNGGFDF  120
IEDLIRVVDC VESDELQLAQ VILSRLNQRL RSPAGRPLQR AAFYFKEALG SLLTGTNRNP  180
IRLSSWSEIV QRIRAIKEYS GISPIPLFSH FTANQAILDS LSSQSSSPFV HVVDFDIGFG  240
GQYASLMREI AEKSVSGGFL RVTAVVAEEC AVETRLVKEN LTQFAAEMKI RFQIEFVLLK  300
TFEMLSFKAI RFVEGERTVV LISPAIFRRL SGIADFVNNL RRVSPKVVVF VDSEGWTEIA  360
GSGSFRREFV SALEFYTMVL ESLDAAAPPG DLVKKIVEAF VLRPKICAAV ETAADRRNTG  420
EMTWREPFCA AGMRPIQLSQ FADYQAECLL EKAQVRGFHV AKRQGELVLC WHGRALVATS  480
AWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2811448213378Protein SCARECROW
5b3h_A3e-2812648224377Protein SCARECROW
5b3h_D3e-2812648224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1527.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184970.0AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283643.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0F5610.0R0F561_9BRAS; Uncharacterized protein
STRINGBostr.7867s1527.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]