PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7867s1419.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 292aa MW: 33850.2 Da PI: 9.4011

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s1419.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.6	3.3e-25	212	260	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sledlskyF l+i +A+++L+v+lT+LK++CR++GI+RWP+Rkiksl Bostr.7867s1419.2.p 212 GLSLEDLSKYFGLTIVEASRNLNVGLTILKKKCREFGIPRWPRRKIKSL 260 589********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.211	195	283	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-20	213	260	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MAHSLTSLTI FQSVIRKEMV RSLHVYGSVE IEREFLFESK SRYVEKKAKP LFRSVDFRRP 60 EISERSVFGT WRCIFVFRFN HSLPQFPTLL CLSRNPKLED IPNLANELKF ISELKSRKPS 120 KISDQEQCSR VGYCKLDQPK PLKLVFKEDS VQDCEVDQPK PRKLVLKQDL NYLPDSETES 180 EESENDKTEH SESDAKTEML RKKRTPSKIV AGLSLEDLSK YFGLTIVEAS RNLNVGLTIL 240 KKKCREFGIP RWPRRKIKSL DSLIHDLQVF SLFINLIHQF TETGISMFCI A*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s1419.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	8e-93	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	8e-93	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	8e-93	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010437453.1	1e-148	PREDICTED: protein RKD5-like
Swissprot	O81791	1e-137	RKD5_ARATH; Protein RKD5
TrEMBL	V4MLF6	1e-146	V4MLF6_EUTSA; Uncharacterized protein
STRING	Bostr.7867s1419.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-133	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bostr.7867s1419.2.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]