PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7867s1419.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 342aa MW: 39976.1 Da PI: 10.3724

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s1419.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.3	4.1e-25	212	260	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sledlskyF l+i +A+++L+v+lT+LK++CR++GI+RWP+Rkiksl Bostr.7867s1419.1.p 212 GLSLEDLSKYFGLTIVEASRNLNVGLTILKKKCREFGIPRWPRRKIKSL 260 589********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.553	195	280	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-20	213	260	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MAHSLTSLTI FQSVIRKEMV RSLHVYGSVE IEREFLFESK SRYVEKKAKP LFRSVDFRRP 60 EISERSVFGT WRCIFVFRFN HSLPQFPTLL CLSRNPKLED IPNLANELKF ISELKSRKPS 120 KISDQEQCSR VGYCKLDQPK PLKLVFKEDS VQDCEVDQPK PRKLVLKQDL NYLPDSETES 180 EESENDKTEH SESDAKTEML RKKRTPSKIV AGLSLEDLSK YFGLTIVEAS RNLNVGLTIL 240 KKKCREFGIP RWPRRKIKSL DSLIHDLQRE AEKQQEKNEA AAMAVAKRRK KLETEKRNIL 300 ERPFMEIHIE TKRFRQVNFK KRHRASRAKK NQETFVTSSS T*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MAHSLTSLTI FQSVIRKEMV RSLHVYGSVE IEREFLFESK SRYVEKKAKP LFRSVDFRRP  60
EISERSVFGT WRCIFVFRFN HSLPQFPTLL CLSRNPKLED IPNLANELKF ISELKSRKPS  120
KISDQEQCSR VGYCKLDQPK PLKLVFKEDS VQDCEVDQPK PRKLVLKQDL NYLPDSETES  180
EESENDKTEH SESDAKTEML RKKRTPSKIV AGLSLEDLSK YFGLTIVEAS RNLNVGLTIL  240
KKKCREFGIP RWPRRKIKSL DSLIHDLQRE AEKQQEKNEA AAMAVAKRRK KLETEKRNIL  300
ERPFMEIHIE TKRFRQVNFK KRHRASRAKK NQETFVTSSS T*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s1419.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	9e-93	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	9e-93	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	9e-93	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010437453.1	0.0	PREDICTED: protein RKD5-like
Refseq	XP_019089344.1	0.0	PREDICTED: protein RKD5-like
Swissprot	O81791	0.0	RKD5_ARATH; Protein RKD5
TrEMBL	V4MLF6	0.0	V4MLF6_EUTSA; Uncharacterized protein
STRING	Bostr.7867s1419.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-164	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bostr.7867s1419.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]