PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1416.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 524aa    MW: 58633.4 Da    PI: 5.4312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1416.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.62.8e-5491351127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi++vd++k+ePwdLp+   +k+++ ew+fF++rd+ky++g+r+nrat+sgyWkatgk
  Bostr.7867s1416.1.p   9 LPLGFRFRPTDEELVNHYLRLKINGRHSDV-RVIPDVDVCKWEPWDLPAlsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGK 97 
                          699************************999.99***************4447888889******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          d++++s k++l+g+kktLvfy+grapkge+t+W+mheyr
  Bostr.7867s1416.1.p  98 DRSIKS-KKTLIGMKKTLVFYRGRAPKGERTNWIMHEYR 135
                          ******.999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-634159IPR003441NAC domain
PROSITE profilePS5100557.7669159IPR003441NAC domain
PfamPF023651.2E-2810135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MGAVSMESLP LGFRFRPTDE ELVNHYLRLK INGRHSDVRV IPDVDVCKWE PWDLPALSVI  60
KTDDPEWFFF CPRDRKYPNG HRSNRATDSG YWKATGKDRS IKSKKTLIGM KKTLVFYRGR  120
APKGERTNWI MHEYRPTLKE LDGTAPGQSP FVLCRLFHKL DDRVNGVKSD ESTPTTCKYS  180
PDDTSSDLVQ ETPSSDAAVE KPSDYSGGCG YGQSTTADGT MIEALEENPW LSCDLEDQRA  240
PPPCMDSTYG GDFSYDEIGF HFQDGTSEPD VSLTELLEEV FNNPDDFSCE ESISRENPVA  300
PNGIFSSGKM LQSAAPEDVF FNDIYTDTDA EMVQLQYGSD HGASGWPREA QSAYPATNSY  360
YGDFVHPEQM INHNTENNLT EGRGIKIRAR QPQNRPSTGL INQGIASRRI RLQLQSSSVP  420
PGEKNQFEVK QWEEVNEGHT FIPQGNEVAP KQSEKSDSIV KPQIKLRARG ITGQVKAGRV  480
ADDEVQVQSR KRREGKRWKL VATVMMAVMV GVGVGVWRRL VGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44415912165NO APICAL MERISTEM PROTEIN
1ut4_B2e-44415912165NO APICAL MERISTEM PROTEIN
1ut7_A2e-44415912165NO APICAL MERISTEM PROTEIN
1ut7_B2e-44415912165NO APICAL MERISTEM PROTEIN
3swm_A2e-44415915168NAC domain-containing protein 19
3swm_B2e-44415915168NAC domain-containing protein 19
3swm_C2e-44415915168NAC domain-containing protein 19
3swm_D2e-44415915168NAC domain-containing protein 19
3swp_A2e-44415915168NAC domain-containing protein 19
3swp_B2e-44415915168NAC domain-containing protein 19
3swp_C2e-44415915168NAC domain-containing protein 19
3swp_D2e-44415915168NAC domain-containing protein 19
4dul_A2e-44415912165NAC domain-containing protein 19
4dul_B2e-44415912165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1416.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0311351e-159AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBankAL1615871e-159AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026871e-159CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286077.10.0protein NTM1-like 9 isoform X1
SwissprotF4JN350.0NTL9_ARATH; Protein NTM1-like 9
TrEMBLR0H2V40.0R0H2V4_9BRAS; Uncharacterized protein
STRINGBostr.7867s1416.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.10.0NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]