PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7867s1388.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 976aa MW: 108418 Da PI: 6.3316

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s1388.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	652	702	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Bostr.7867s1388.1.p 652 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 702 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	641	722	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	655	702	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-24	864	959	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.0E-24	874	956	No hit	No description
PROSITE profile	PS51745	29.349	874	957	IPR000270	PB1 domain
SMART	SM00666	2.1E-28	874	957	IPR000270	PB1 domain
Pfam	PF00564	7.9E-19	876	956	IPR000270	PB1 domain
CDD	cd06407	3.34E-42	876	956	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MEGGGGGGGG DGNFLHNSNF GAFSETAMDM DFMEELLFDG CWLETTDGKS LKQTTGQPVS 60 DSTTMNDNNN NSFLYGYQFA ENLSQDHISN EETGKKFPPI TPGFLKIEDL SNQSMNQVPF 120 DQSAAMSSAQ AEKFLLEETD GGRRWWIAPR TSQGPSSSVK ERLVQAIKGL NEAVQDKDFL 180 IQIWVPIQQE GKNFLTTLEQ PHFFNPKYSS LKRYRDVSVA YNFPADEDSK ESVGLPGRVF 240 LGKLPEWTPD VRFFRSEEYP RIKEAEKCDV RGSLALPVFE RGSGTCLGVV EIVTTTQKMN 300 YRPELDNICR ALESVNLRSS RNLKSPSREF LQVYNEFYYA ALPEVSEFLT LVCRSYDLPL 360 ALTWAPCARQ GKVGSRHSDE NFSECVSTVD DACIVPDHQS RNFLEACSEH HLLQGEGIVG 420 KAFKATKLFF VPEVTTFSKT NYPLAHHAKI SGLHAALAVP LKSKFNGSVE FVLEFFFPKT 480 CLDTEAQQEM LKSLSVTLQQ DFRSLNLVID KELELEVVFP VREEVVFADS PLINAQTGEN 540 MKPLPLEEIS QEDSSWISHM IKANEKGKGV SLSWEYQKEE PKEEFMLTSG WDNNQFGSGH 600 NNFLSEAKQF QKVSNPGLRI DMDPSFESAS FGVGQTLLGS RRPGEKRRTK TEKTIGLEVL 660 RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLKKLQ LVIDSVQGVQ 720 GSIQLDSFYT SFPELSSPHM SGTGTSIKNT DQSRNLTAQT ENGVSAQGTA AAPRSPPSSS 780 CSHSSGSSTC CSTGANQSTN TGNTSNTVTT LMAENASAIL KRARSEVRLH TMNQEEIKSL 840 PRTLSHKTFI EHPLFENLPR LPESSSRKLK VGGASKVKAT FGEAKVRFTL LPTWGFRELQ 900 HEIAKRFNID NIATFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEAFQG 960 KMGGSFGSIG LGPSL*

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MEGGGGGGGG DGNFLHNSNF GAFSETAMDM DFMEELLFDG CWLETTDGKS LKQTTGQPVS  60
DSTTMNDNNN NSFLYGYQFA ENLSQDHISN EETGKKFPPI TPGFLKIEDL SNQSMNQVPF  120
DQSAAMSSAQ AEKFLLEETD GGRRWWIAPR TSQGPSSSVK ERLVQAIKGL NEAVQDKDFL  180
IQIWVPIQQE GKNFLTTLEQ PHFFNPKYSS LKRYRDVSVA YNFPADEDSK ESVGLPGRVF  240
LGKLPEWTPD VRFFRSEEYP RIKEAEKCDV RGSLALPVFE RGSGTCLGVV EIVTTTQKMN  300
YRPELDNICR ALESVNLRSS RNLKSPSREF LQVYNEFYYA ALPEVSEFLT LVCRSYDLPL  360
ALTWAPCARQ GKVGSRHSDE NFSECVSTVD DACIVPDHQS RNFLEACSEH HLLQGEGIVG  420
KAFKATKLFF VPEVTTFSKT NYPLAHHAKI SGLHAALAVP LKSKFNGSVE FVLEFFFPKT  480
CLDTEAQQEM LKSLSVTLQQ DFRSLNLVID KELELEVVFP VREEVVFADS PLINAQTGEN  540
MKPLPLEEIS QEDSSWISHM IKANEKGKGV SLSWEYQKEE PKEEFMLTSG WDNNQFGSGH  600
NNFLSEAKQF QKVSNPGLRI DMDPSFESAS FGVGQTLLGS RRPGEKRRTK TEKTIGLEVL  660
RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLKKLQ LVIDSVQGVQ  720
GSIQLDSFYT SFPELSSPHM SGTGTSIKNT DQSRNLTAQT ENGVSAQGTA AAPRSPPSSS  780
CSHSSGSSTC CSTGANQSTN TGNTSNTVTT LMAENASAIL KRARSEVRLH TMNQEEIKSL  840
PRTLSHKTFI EHPLFENLPR LPESSSRKLK VGGASKVKAT FGEAKVRFTL LPTWGFRELQ  900
HEIAKRFNID NIATFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEAFQG  960
KMGGSFGSIG LGPSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s1388.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022604	0.0	AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006283076.1	0.0	protein NLP2
Refseq	XP_006283077.1	0.0	protein NLP2
Refseq	XP_023634877.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	R0GGQ7	0.0	R0GGQ7_9BRAS; Uncharacterized protein
STRING	Bostr.7867s1388.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.7867s1388.1.p