PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1329.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 270aa    MW: 30405.8 Da    PI: 5.8886
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1329.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.2e-18182215134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  Bostr.7867s1329.1.p 182 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 215
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.1E-846269IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-15176226IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-15179239No hitNo description
PROSITE profilePS5011411.952180212IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.4E-14180213IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.77E-15181238No hitNo description
PfamPF003205.0E-16182216IPR000679Zinc finger, GATA-type
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MELWTEARAL KASLRGESTT SLKHHQVIVS EDLSRTSSLS EDFSVECFLD FSEGQLEEEE  60
LVSVSSSQEE QEQEQDCIFS SEPCIFDQLP SLPDEDVEEL EWVSRVVDDC SSPEVSLLFT  120
QTHKTKPSFS SRIPVKPRTK RSRNSLTGGR VWPLVSTNHQ HAATEKWSKK KQETAVVFQR  180
RCSHCGTNNT PQWRTGPVGP KTLCNACGVR FKSGRLCPEY RPADSPTFSN EIHSNLHRKV  240
LELRKSKELG EETGEASTKS DQVKFGSQW*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1329.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171630.0AK317163.1 Arabidopsis thaliana AT4G34680 mRNA, complete cds, clone: RAFL21-96-H07.
GenBankY136500.0Y13650.1 Arabidopsis thaliana mRNA for GATA transcription factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875245.11e-177GATA transcription factor 3
SwissprotQ8L4M61e-169GATA3_ARATH; GATA transcription factor 3
TrEMBLD7MDJ61e-176D7MDJ6_ARALL; GATA transcription factor
STRINGBostr.7867s1329.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-166GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]