PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1302.4.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 766aa    MW: 83643.7 Da    PI: 4.4277
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1302.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-11175217246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+WT +E +ll++a + +  + W+ Ia+++  ++t  qc +++++
  Bostr.7867s1302.4.p 175 GKWTDQETLLLLEALEIFKEN-WNEIAEHVA-TKTKAQCMLHFLQ 217
                          89*****************88.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093412.172152IPR007526SWIRM domain
SuperFamilySSF466891.61E-6244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.107.9E-4349IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM002911.3E-8114158IPR000433Zinc finger, ZZ-type
PROSITE profilePS501359.159114160IPR000433Zinc finger, ZZ-type
SuperFamilySSF578509.65E-11116174No hitNo description
PfamPF005691.3E-8117153IPR000433Zinc finger, ZZ-type
CDDcd023363.05E-15118151No hitNo description
PROSITE patternPS013570120146IPR000433Zinc finger, ZZ-type
Gene3DG3DSA:1.10.10.601.2E-8170215IPR009057Homeodomain-like
SuperFamilySSF466894.64E-13172231IPR009057Homeodomain-like
PROSITE profilePS5129321.942172223IPR017884SANT domain
SMARTSM007172.2E-11173221IPR001005SANT/Myb domain
PfamPF002496.4E-11175218IPR001005SANT/Myb domain
CDDcd001670.00113193218No hitNo description
PfamPF164953.6E-24616695IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MRKFHSNPNI QIELKDLTEL EVGDSDAKQE VMEFLDYWGL INFHPFPPSD AGSTASDHDD  60
LGDKESLLNS LYRFQADEAC PPPVHKPRLT AQATLSGLFP DPMAADELLK QEGPAVEYHC  120
NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ  180
ETLLLLEALE IFKENWNEIA EHVATKTKAQ CMLHFLQMPI DDAFLDQIDY KDPIRKDTTD  240
LALSKDDQSV LKDAPDEAEN KKRVDEDETM KEVPEPEVDN EGKVSQESSK PEETNEVEAD  300
QKTPKLETVI DERCKDETDE NIALKALAEA FEDVGYSSTP EASFSFADLG NPVMGLAAFL  360
VRLAGSDVAT ASARASIKSL HSNSGLLLAT RHCYILEDPP DNKKDSTESK SADAEGNDDN  420
AHKDEQPEEK SQKAEEVSLN SDDKEMPYTD TDAVQEKRSS KPVTTDNSEK PADIICPSQD  480
KCSGKELQEP LKDVNKLSSE NKDASQATIS QSAADASQPE ASRDVEMKDT LQSEKDPQDV  540
VKTVGEEVQQ AKEEGAKDVL STPDTSVVQQ PIGSASAPEN GTAGGNPNKE GKKEKDFCEG  600
TKDKHNIEKL KRAAISAISA AAVKAKNLAK QEEDQIRQLS GSLIEKQLHK LEAKLSIFNE  660
AESLTVRVRE QLERSRQRLY HERAQIIAAR LGVPPSMSSK ASLPTNRIAA NFANVAPRPP  720
LGMAFPRPPM PRPPPGFTVP GSFVAATTMT GSSDPSPGSD NVSSV*
Functional Description ? help Back to Top
Source Description
UniProtComponent of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1302.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172840.0AK117284.1 Arabidopsis thaliana At4g34430 mRNA for unknown protein, complete cds, clone: RAFL16-84-D11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873110.10.0SWI/SNF complex subunit SWI3D
SwissprotQ8VY050.0SWI3D_ARATH; SWI/SNF complex subunit SWI3D
TrEMBLD7MF140.0D7MF14_ARALL; Uncharacterized protein
STRINGBostr.7867s1302.1.p0.0(Boechera stricta)
Publications ? help Back to Top
  1. Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A
    AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time.
    Nucleic Acids Res., 2002. 30(15): p. 3412-21
    [PMID:12140326]
  2. Zhou C,Miki B,Wu K
    CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis.
    Plant Mol. Biol., 2003. 52(6): p. 1125-34
    [PMID:14682613]
  3. Sarnowski TJ, et al.
    SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development.
    Plant Cell, 2005. 17(9): p. 2454-72
    [PMID:16055636]
  4. Liu ZW, et al.
    The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci.
    PLoS Genet., 2014. 10(1): p. e1003948
    [PMID:24465213]
  5. Liu ZW, et al.
    Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis.
    PLoS Genet., 2016. 12(5): p. e1006026
    [PMID:27171427]