PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s1124.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 996aa MW: 110292 Da PI: 5.5774 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.8e-18 | 35 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Bostr.7867s1124.1.p 35 KGQWTPEEDEVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 81 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 59.6 | 6.8e-19 | 87 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l Bostr.7867s1124.1.p 87 KGPWSKEEDNMIISLVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHL 133 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.9 | 8.6e-17 | 139 | 181 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE++ l++a++ +G++ W+ ++ ++ gR+++++k++w+ Bostr.7867s1124.1.p 139 KNAWTQEEELTLIRAHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 181 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.523 | 30 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 35 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 36 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.51E-15 | 36 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-13 | 38 | 81 | No hit | No description |
PROSITE profile | PS51294 | 32.418 | 82 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-31 | 84 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-18 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-18 | 87 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.85E-16 | 89 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 94 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.286 | 138 | 188 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-15 | 138 | 186 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 139 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-11 | 141 | 181 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 141 | 188 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 996 aa Download sequence Send to blast |
MKREMKAPNI PQESFQGELK GKHGRTSGPA RRSTKGQWTP EEDEVLCKAV ERFQGKNWKK 60 IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNMIIS LVEKYGPKKW STISQHLPGR 120 IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW 180 NSSVKKKLDS YYASGLLDQC QSSPLIALQN KSIASSSSWM HSSGDEGNSR PGVDAEESEC 240 SQASTVFSQS TNDLQDEVKP GNEEFYMSEF HSGAVQQISN AASHAEPYYP SVEDVKIVVP 300 EISCEAECSK KFQNLNCSQE VRTTTTTEDQ LQGVSNDAKQ DLDLDLLTHN MDNDGKNQAL 360 QQAFQSSVRL SDQSSLPNSD TDPEAQTLIT DEECCRVLFP DTMKDSCTSS GEQGRNMIDP 420 QKGKGSLCPQ SAETHAHETG KLPALSWHPS SSEGLAGHNC VPLLDSDFKD SLLLRNDSNA 480 PIQGCYLFGA TELERQTDTN DGFIDTDGHI TSHGNDDNDG IPEQQGLSYI PKDSLKLIPL 540 NSFSSPSRVN KIYFPIDDKP AERGKGALCY EPPRFPSADI PFFSCDLVPS NNDLRQEYSP 600 FGIRQLMISS MNCTTPLRLW DSPCHDRSPD VMLNDAAKSF SNAPSILKKR HRDLLSPVLD 660 RRKDKKLKRA ATSSLAKDFS CLDVMLDEGN DCMSSRPSES PENKNRCASP SEAKDNRYSA 720 SGRSDQEMIP IDEKPKETLK SGGVTSMQNE KGCNDGGASA NNDQETSGSF VEIRLCSPGM 780 TGCRSANKVN TSAKDLSNQH KRSLGDIPTE EISSEPPCTV DSIPLSAIDK TNTAETSFDI 840 ENFNIFDGTP FRKLLDTPSP WKSPLLFGSF LQSPKLPPEI TFEDIGCFMS PGERSYDAIG 900 LMKHLSEHSA TAYADALEVL GNDTPETILK KRQLNKSIQG KENQHHPHDQ LGNRSQVERR 960 TLDFSDCGTP GKAKVSSASP GGYSSPSSYL LKSCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-67 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-67 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 659 | 666 | DRRKDKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s1124.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF151646 | 0.0 | AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds. | |||
GenBank | AF176005 | 0.0 | AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872494.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_020872495.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_020872496.1 | 0.0 | transcription factor MYB3R-1 | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | D7M9P9 | 0.0 | D7M9P9_ARALL; PC-MYB1 | ||||
STRING | Bostr.7867s1124.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s1124.1.p |
Publications ? help Back to Top | |||
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