PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1023.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 382aa    MW: 43793.3 Da    PI: 9.7632
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-1822961293
                         HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                         ++ rl++p  f++ + +gk +e+kt +l++ +s ++We+k+  ++++    +t+GWkeFvka++L+ gD+++F+++g++ f  +
  Bostr.7867s1023.1.p 22 SETRLTIPVVFFSMYiEGK-HEQKTARLRSdSSEKTWELKM--DGRR----FTEGWKEFVKAHDLRIGDVIIFRHEGDMLF--N 96
                         5678*********997555.5678*****96777*******..9998....9**********************9998777..3 PP
2B369.54.5e-22146240398
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           + +++++lk + ++lpkk a++  ++k+++ +++l +++g+sW+++l +r + g+y +++GWk+F+++n+ ++gD+++F l+g+ + ++
  Bostr.7867s1023.1.p 146 VANVTASNLKMDTISLPKKAARSKALNKRCH-KIILVNKEGNSWTLNLGFRESEGSYHMSGGWKKFCRENRQRVGDIITFNLVGDGKSTP 234
                          5678999********************9887.*****************************************************99999 PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                          ++ ++ 
  Bostr.7867s1023.1.p 235 LLCICP 240
                          999996 PP
3B346.56.7e-15274373199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 
                          f+++ ++s++ k++ l+lp +f+ +++g+++e+ +++led++g +   kl+    k+++r  l+kGWk F++ ng+   g+ +++kl++ 
  Bostr.7867s1023.1.p 274 FVTISLTSYNIKKSKLILPVEFT-KINGITNEHEKIILEDKHGVKRLTKLSRdgPKNGRRRGLGKGWKLFCEVNGVLkIGEPFTLKLIW- 361
                          788899****************9.6666778889****************998855555668*************644***********. PP

                          SEE..EEEEE-S CS
                   B3  88 sefelvvkvfrk 99 
                          +++++++k+f+k
  Bostr.7867s1023.1.p 362 ENTTPLLKFFSK 373
                          88889*999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-228105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-209109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.90111103IPR003340B3 DNA binding domain
CDDcd100176.68E-1712100No hitNo description
SMARTSM010198.0E-2414103IPR003340B3 DNA binding domain
PfamPF023629.3E-132295IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-19143231IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.325144242IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-19144239IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-17144240No hitNo description
SMARTSM010193.6E-20145242IPR003340B3 DNA binding domain
PfamPF023624.4E-20146240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-14266371IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-14270376IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-14273372No hitNo description
PROSITE profilePS508639.065274374IPR003340B3 DNA binding domain
SMARTSM010192.3E-22274374IPR003340B3 DNA binding domain
PfamPF023625.8E-14274373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVNSPLQSPT NPHFFQPLLP GSETRLTIPV VFFSMYIEGK HEQKTARLRS DSSEKTWELK  60
MDGRRFTEGW KEFVKAHDLR IGDVIIFRHE GDMLFNVTPF GPSCCEIQYA HSHIKEEDDN  120
DDDDDENDME NQHNASKGVS YDYCFVANVT ASNLKMDTIS LPKKAARSKA LNKRCHKIIL  180
VNKEGNSWTL NLGFRESEGS YHMSGGWKKF CRENRQRVGD IITFNLVGDG KSTPLLCICP  240
EEVCSELMSR ARGNKKMKKR RKWVVSSSRR ENRFVTISLT SYNIKKSKLI LPVEFTKING  300
ITNEHEKIIL EDKHGVKRLT KLSRDGPKNG RRRGLGKGWK LFCEVNGVLK IGEPFTLKLI  360
WENTTPLLKF FSKAKEEPIY V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257261KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867283.10.0B3 domain-containing protein REM7
RefseqXP_006283864.10.0B3 domain-containing protein REM7
TrEMBLD7MB370.0D7MB37_ARALL; Uncharacterized protein
TrEMBLR0F4T20.0R0F4T2_9BRAS; Uncharacterized protein
STRINGBostr.7867s1023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.15e-86B3 family protein