PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1018.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 451aa    MW: 51381.4 Da    PI: 8.551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.4e-1821971094
                         HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                          ++++ l +p kf++e    +++++t+ l +  s r+W+vk+  ++++    lt+GWkeFv+a++L+ gDfvvF+++g++ f  +v
  Bostr.7867s1018.1.p 21 GFQNH-LNIPVKFFSEQIVRNHKGRTVNLISdASERTWKVKM--EGHR----LTDGWKEFVEAHDLRIGDFVVFRHEGDMLF--NV 97
                         45555.9*******999444456778998876999*******..6666....***********************9998877..44 PP
2B370.32.5e-221492321499
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++ ++p +fa+++g++ke++  ++l++e+g+sWe +++ +++  r+ + +GW +F+ an+L++gD+++F+l +++ +++v++++++
  Bostr.7867s1018.1.p 149 SQSCVPINFAKRNGLNKERQ-HIVLMNEEGKSWESEVKTWGRC-RVSIVRGWTSFCTANKLEVGDSCTFRLLRNTAETPVFQLCSR 232
                          45589***********9775.****************888875.788999***********************9**********97 PP
3B344.33.2e-142533361498
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +r+ lp +f++e+ +++++  +++l d++  +W++kl+++k++g  y+++ +GWk+F+ an++ ++++++++l++  ++++++k+ +
  Bostr.7867s1018.1.p 253 NRFNLPVSFTRENALINPG--KIILVDKNRAEWSMKLKVDKTKGVmYIIRgNGWKNFCAANEIGARESLILELIR-GGASPLLKFSS 336
                          799**********999655..7****************99999885444449*********************98.67777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-255105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-229109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.46511103IPR003340B3 DNA binding domain
CDDcd100171.69E-171298No hitNo description
SMARTSM010193.4E-2414103IPR003340B3 DNA binding domain
PfamPF023624.0E-122495IPR003340B3 DNA binding domain
SMARTSM010198.4E-21135233IPR003340B3 DNA binding domain
CDDcd100171.75E-18141226No hitNo description
SuperFamilySSF1019362.16E-19142232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-19142231IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-21151232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493153232IPR003340B3 DNA binding domain
SMARTSM010191.1E-16247338IPR003340B3 DNA binding domain
CDDcd100178.67E-15248334No hitNo description
SuperFamilySSF1019366.47E-15251339IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-14253337IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.969253338IPR003340B3 DNA binding domain
PfamPF023621.3E-12253336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MTNASMLSPT NPHFFQPLLP GFQNHLNIPV KFFSEQIVRN HKGRTVNLIS DASERTWKVK  60
MEGHRLTDGW KEFVEAHDLR IGDFVVFRHE GDMLFNVTAL GPSCCEIQYA QPRSHEEDEE  120
KISSRFGKQV EENVQTESDQ SSSDISCFSQ SCVPINFAKR NGLNKERQHI VLMNEEGKSW  180
ESEVKTWGRC RVSIVRGWTS FCTANKLEVG DSCTFRLLRN TAETPVFQLC SRKKSERKIQ  240
SAEDCIYDKP GGNRFNLPVS FTRENALINP GKIILVDKNR AEWSMKLKVD KTKGVMYIIR  300
GNGWKNFCAA NEIGARESLI LELIRGGASP LLKFSSKMEQ PPFEAEARAH KRARVQRWSQ  360
ETEPKLEMRE KTTKEGELSR ASNKFSGNQE NLQHTQPCSG RTRINQVAEV KQSVVDALTS  420
IRRFMAELET TEQKLEISLQ EINNLGMICT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872301.10.0B3 domain-containing protein REM8
SwissprotQ8H2D10.0REM8_ARATH; B3 domain-containing protein REM8
TrEMBLD7MB410.0D7MB41_ARALL; Uncharacterized protein
STRINGBostr.7867s1018.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]