PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1016.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 483aa    MW: 54094.4 Da    PI: 9.0955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.3e-12221001297
                          HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          ++++ ++p  f+++h + k +s++++l++  s r+Wev+l  ++++    +++GWk+F   + L++ D++ F++dg+ +f  +v+ f
  Bostr.7867s1016.1.p  22 QNSNPIIPALFIAKHFKGKIQSTKMKLTSvASDRTWEVEL--DGGR----FAGGWKDFSIFHCLRDDDVLSFRHDGDIGF--HVTPF 100
                          455579*********55667999******8888*******..9998....99*********************9998777..77665 PP
2B363.82.7e-201542411099
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +++ ++ l  kfa+++g++k+e   + l++e+ +sW++ l+++k+ g+ ++++GW++F++ ng+k+g f+ Fkl++ s++++v++++ +
  Bostr.7867s1016.1.p 154 LHQKTLILLRTKFARSNGLDKREC-VIDLMNEHEKSWTLHLRHNKRTGQAFMRGGWRNFCRNNGIKAGSFCRFKLIQ-SGTKPVLQLCPN 241
                          45556678899*******999775.9**************************************************9.99999*999975 PP
3B347.82.5e-15272362699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvv 94 
                          ++++v +s+++vlp  fa+e+g  +++  ++t+ +++g++W+  l   k++++++++ G k+F  ang+k +gD++++++++  ++++ +
  Bostr.7867s1016.1.p 272 LKPYVIRSSQFVLPALFARENGVLEAG--EVTVVNKDGEEWKSHLVNVKGRDQFYIR-GCKKFFVANGIKnVGDSFTLEVIR-GGTSPIL 357
                          5799*****************877666..79999***********888899999999.************9********997.88889** PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                          k+++k
  Bostr.7867s1016.1.p 358 KICSK 362
                          **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-137103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-128103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.96811103IPR003340B3 DNA binding domain
SMARTSM010193.3E-1314103IPR003340B3 DNA binding domain
CDDcd100173.75E-1027100No hitNo description
PROSITE profilePS5086312.548145241IPR003340B3 DNA binding domain
SMARTSM010193.4E-21145242IPR003340B3 DNA binding domain
PfamPF023621.2E-18156241IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-17158245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-18160241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-18164240No hitNo description
Gene3DG3DSA:2.40.330.108.2E-10264362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-10264361IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-11266361No hitNo description
SMARTSM010194.4E-19267363IPR003340B3 DNA binding domain
PROSITE profilePS508638.557267363IPR003340B3 DNA binding domain
PfamPF023621.6E-14271362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MADPLISSPT NKAFFVIDLS GQNSNPIIPA LFIAKHFKGK IQSTKMKLTS VASDRTWEVE  60
LDGGRFAGGW KDFSIFHCLR DDDVLSFRHD GDIGFHVTPF GRSFSQIQSF DADDDNDDED  120
DNVDVGDDEY LISEEDLYSK KISSKKRART EQSLHQKTLI LLRTKFARSN GLDKRECVID  180
LMNEHEKSWT LHLRHNKRTG QAFMRGGWRN FCRNNGIKAG SFCRFKLIQS GTKPVLQLCP  240
NTSSIPEGNS SKANQKGNTV PMHQNKILTL DLKPYVIRSS QFVLPALFAR ENGVLEAGEV  300
TVVNKDGEEW KSHLVNVKGR DQFYIRGCKK FFVANGIKNV GDSFTLEVIR GGTSPILKIC  360
SKVKQASFDD YKTLERKPRV TVQAPHAEEE TENRVQKTAR VCTEGGPSRC IRALNKSSTR  420
KFAAQATNQP CSISDDVKKV KQTIVDTLTD IKEQNLEVSL QVIDALGEKI TGISKIFNIN  480
QV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0310043e-93AL031004.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project).
GenBankAL1615793e-93AL161579.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75.
GenBankCP0026873e-93CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432841.10.0PREDICTED: putative B3 domain-containing protein REM4 isoform X1
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A178V3B80.0A0A178V3B8_ARATH; Uncharacterized protein
STRINGBostr.7867s1016.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]