PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0982.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 293aa    MW: 33242.2 Da    PI: 4.5304
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0982.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.41.4e-111997280
             trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
                         Wt +  l L++    +e + +++ +  ++W  +s+++ +  ++r+ +qC+ kw++l  +y +ik++e++    ++s ++
  Bostr.7867s0982.1.p 19 WTVKDCLILVNEIAAVEADCSNALSSFQKWTMISENCNALDVRRTLNQCRRKWDSLVSDYNQIKQWESQYLGSARSYWS 97
                         99999999999999*****************************************************997666655665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-91896No hitNo description
PROSITE profilePS500906.471975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDEGASGSRR TRSQVAPDWT VKDCLILVNE IAAVEADCSN ALSSFQKWTM ISENCNALDV  60
RRTLNQCRRK WDSLVSDYNQ IKQWESQYLG SARSYWSLSS EKRKILNLPG SIDNELFEAI  120
NAVVMIQEDK AGTEPDSDPE AQDVVDVTAE LAFIGSKRSR QRTKVTQVIL PQKTKKEEPQ  180
TYRVQEYTQE KPTKATHQNK TTEEKKLVAE ISTDEEEEET MNIEEEVEVM EAKLSYKIDL  240
IHAIVGRNLA KDNETGDDIS MDDKLKYVRQ QGDELIACLS EIVNTLGRLR EV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161KRSRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0982.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186740.0AK118674.1 Arabidopsis thaliana At4g31270 mRNA for unknown protein, complete cds, clone: RAFL19-94-K08.
GenBankBT0052870.0BT005287.1 Arabidopsis thaliana At4g31270 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284106.21e-172trihelix transcription factor ASR3 isoform X2
TrEMBLR0GJH31e-171R0GJH3_9BRAS; Uncharacterized protein
STRINGBostr.7867s0982.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-158sequence-specific DNA binding transcription factors