PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0950.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 475aa    MW: 52070.9 Da    PI: 5.7187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0950.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.81.4e-25176232259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ +kvvei+++g H he
  Bostr.7867s0950.1.p 176 RDGYNWRKYGQKQVKSPKGSRSYYRCTYSECCAKK-IECSNDSGKVVEIVNKGLHSHE 232
                          7********************************98.*********************8 PP
2WRKY98.44.4e-31339396259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ e++++v+itY+g Hnh+
  Bostr.7867s0950.1.p 339 GDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVENTTAVIITYKGVHNHD 396
                          5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-20172234IPR003657WRKY domain
SuperFamilySSF1182901.29E-19172234IPR003657WRKY domain
SMARTSM007741.1E-23175233IPR003657WRKY domain
PROSITE profilePS5081116.8177234IPR003657WRKY domain
PfamPF031068.9E-17177231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-32323398IPR003657WRKY domain
PROSITE profilePS5081132.156333398IPR003657WRKY domain
SuperFamilySSF1182904.05E-27334398IPR003657WRKY domain
SMARTSM007743.6E-35338397IPR003657WRKY domain
PfamPF031068.7E-24340396IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEDSGIDEAE VYAVEKSTPK TEKSEKLKPE KELDNGLSQL RDEESLGEDL DDLHDEAVRE  60
TLDKDQVEGV RENSSVEPNG EDVGEVKETD SVKEIVVSAV VPVDEVEENR EVEPSPCLTA  120
SSDSLTVKPS PSSDPATASA AHGLSLVSIP TKQEQRSDSR VVSRLSVSPV PRTPARDGYN  180
WRKYGQKQVK SPKGSRSYYR CTYSECCAKK IECSNDSGKV VEIVNKGLHS HEPPRKNSFS  240
PREIRVASAI RPVSDDNTVV EELTIVPSDS DPSASTKENI CESQTIVEQK RHCENEAVVE  300
PEPKRRLKKD NSQSSDSVSK PGKKNKVVVH AAGDVGICGD GYRWRKYGQK MVKGNPHPRN  360
YYRCTSAGCP VRKHIETAVE NTTAVIITYK GVHNHDMPVP KKRHGPPSSM LVAAAAPTSM  420
RTWSDDQVNI PTSSQCSVGR ENEKQSSESL DVGGEKVMES ARTLLSIGFE IKQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-26325398174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0950.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040860.0BT004086.1 Arabidopsis thaliana clone RAFL15-37-C10 (R20909) putative WRKY family transcription factor (At4g30935) mRNA, complete cds.
GenBankBT0051100.0BT005110.1 Arabidopsis thaliana clone U20909 putative WRKY family transcription factor (At4g30935) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873955.10.0probable WRKY transcription factor 32
SwissprotP595830.0WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLR0GNC40.0R0GNC4_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.7867s0950.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63382844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.10.0WRKY DNA-binding protein 32