PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7867s0753.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 406aa MW: 44470.2 Da PI: 6.7569

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s0753.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00054	266	301	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq Bostr.7867s0753.1.p 266 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 301 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.084	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-5	261	305	No hit	No description
SuperFamily	SSF47459	6.28E-10	261	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-7	266	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLIGHQQ APLPPHMTPN NNYLRPRMMP 60 TLLPHFLPSP ATSSSSSSSP SLPNNPNLSS WLESNDLPPE SWSLSQLLLG GLMMGEEERS 120 EMMNHHNHHD EQQHHSFQGK MRLENWEEQV LSQQQASMVA DIKQESNINN NNGYVISSPN 180 SPPNKSCITT TTTSLNSNDD NNNNNNNNML DFSSNHNGLH LSEGRHTPPD RSSECNSLEI 240 GGSTNKKPRL QPSPSPQSTL KVRKEKLGGR IAALHQLVSP FGKTDTASVL SEAIGYIRFL 300 QSQIEALSHP YFGTTASGNM RHQQHLQGDR SCIFPEDPGQ LVNDQCMKRR GASSSSTDNQ 360 NANEEPKKDL RSRGLCLVPI SCTLQVGSDN GADYWAPALG SAGFH*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLIGHQQ APLPPHMTPN NNYLRPRMMP  60
TLLPHFLPSP ATSSSSSSSP SLPNNPNLSS WLESNDLPPE SWSLSQLLLG GLMMGEEERS  120
EMMNHHNHHD EQQHHSFQGK MRLENWEEQV LSQQQASMVA DIKQESNINN NNGYVISSPN  180
SPPNKSCITT TTTSLNSNDD NNNNNNNNML DFSSNHNGLH LSEGRHTPPD RSSECNSLEI  240
GGSTNKKPRL QPSPSPQSTL KVRKEKLGGR IAALHQLVSP FGKTDTASVL SEAIGYIRFL  300
QSQIEALSHP YFGTTASGNM RHQQHLQGDR SCIFPEDPGQ LVNDQCMKRR GASSSSTDNQ  360
NANEEPKKDL RSRGLCLVPI SCTLQVGSDN GADYWAPALG SAGFH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s0753.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488634	0.0	AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY081316	0.0	AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBank	BT000121	0.0	BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010438345.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	0.0	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A178V0M1	0.0	A0A178V0M1_ARATH; Uncharacterized protein
STRING	Bostr.7867s0753.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.7867s0753.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]