PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0694.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 351aa    MW: 40437.3 Da    PI: 6.1909
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0694.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.5e-50101491129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..........lelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                          lppGfrFhP+deelv++yL++k+++k+          l   +    + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nra
  Bostr.7867s0694.1.p  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdhgdieddeaL---KdatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRA 96 
                          79***********************9977765555442...04435999************87788999********************* PP

                  NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          t sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Bostr.7867s0694.1.p  97 TISGYWKATGKDRTVMDPrTRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 149
                          *****************967778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-568167IPR003441NAC domain
PROSITE profilePS5100554.21910167IPR003441NAC domain
PfamPF023651.1E-2611148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD IEDDEALKDA TDLVEIDLHI  60
CEPWQLPDVA KLNAKEWYFF SFRDRKYATG YRTNRATISG YWKATGKDRT VMDPRTRQLV  120
GMRKTLVFYR NRAPNGIKTT WIMHEFRLEC PNIPPKEDWV LCRVFNKGRD SSLQDNNYNN  180
DHQIQRLEII DAPDLNYAPN YNNQLPPLLS SPPHHQQQEK MKIQVCDQWE QLTKQPSRTT  240
DHPYHQHCHH QTVACGWEQM IIGSLSTSSS YGPDHESLLN LLYVDNNNSV SITDDHHQNY  300
EKILLSPDMT RLEHDKTCMG SSSDGGLVSD LHMDCGGLSF ETDDNLLPFH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-451016715168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0694.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024620.0BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds.
GenBankBT0087410.0BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284018.10.0NAC domain-containing protein 21/22
TrEMBLR0F6070.0R0F607_9BRAS; Uncharacterized protein
STRINGBostr.7867s0694.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74