PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s0691.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 34066.3 Da PI: 9.5334 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.6 | 6.2e-33 | 59 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp+G++F+Ptd+e++ e+L+ kv+++ ++ e +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Bostr.7867s0691.1.p 59 LPAGVKFDPTDQEVL-EHLEGKVRDDAkklhplID--EfirTIDGEnGICYTHPEKLP-GVRKDGTVRHFFHRPSKAYTTGTRKRRKVHt 144 799**********99.99******99966654422..22223554445**********.667778899******************7443 PP NAM 80 ......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g++ g kk+Lv+y g+++k++kt+Wvmh y+l Bostr.7867s0691.1.p 145 dsevggETRWHKTGKTRAVLA-GGRVRGYKKILVLYtnYGKEKKPQKTNWVMHLYHL 200 455555778************.9*************655899*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-36 | 53 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.398 | 59 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-14 | 60 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MTWCNDRSDV QTVERIIPSP TAAESPRASL PGSSHKTCPS CGHNFKFHEQ AGIHDLPGLP 60 AGVKFDPTDQ EVLEHLEGKV RDDAKKLHPL IDEFIRTIDG ENGICYTHPE KLPGVRKDGT 120 VRHFFHRPSK AYTTGTRKRR KVHTDSEVGG ETRWHKTGKT RAVLAGGRVR GYKKILVLYT 180 NYGKEKKPQK TNWVMHLYHL GTNEEEKEGE LVVSKVFYQT QPRQCGGSVA AIATAKDRPY 240 LHGLGGGGGG GRHLHYHLHH NNGNIKSNGG GGGTAGAGEY YHNIPALISF NQTEIQSHLV 300 HDSQPFIP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s0691.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056658 | 0.0 | DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438444.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 0.0 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A078HCI7 | 0.0 | A0A078HCI7_BRANA; BnaA01g08370D protein | ||||
TrEMBL | A0A398AJV5 | 0.0 | A0A398AJV5_BRACM; Uncharacterized protein | ||||
STRING | Bostr.7867s0691.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 0.0 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s0691.1.p |
Publications ? help Back to Top | |||
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