PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.7867s0648.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 32779.3 Da PI: 6.3146 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 136 | 186 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+g+ Bostr.7867s0648.1.p 136 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 186 59****999.**********954...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.22E-34 | 135 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-32 | 136 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 136 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-38 | 136 | 199 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-23 | 136 | 194 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-11 | 137 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 137 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 159 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MDFDEELNLC ITKGKNVDHS FGEASSTSPR SMKKMKSHNR PKPYLQSSSF PYSSGAFPFS 60 LDPTMQNQQQ FGSYVPVEQQ YDPTMQGQKQ MISFSPQQQQ QQHMARYWSD TLNLSPRGRM 120 MMMSQEGVQP YSTTKLYRGV RQRQWGKWVA EIRKPRSRAR LWLGTFDTAE EAAMAYDRQA 180 FKLRGHNATL NFPEHFVNME NELHDSNSSP HPKQAETPQP SEVNLESKEV AVTDNEREEG 240 MAEAWYNAVT SGWGPESALW DDLDSSHQFS ESSSSSSLSC PMRPFF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 135 | 193 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00458 | DAP | Transfer from AT4G28140 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.7867s0648.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL161572 | 0.0 | AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68. | |||
GenBank | AY074574 | 0.0 | AY074574.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds. | |||
GenBank | AY097394 | 0.0 | AY097394.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | DQ011579 | 0.0 | DQ011579.1 Arabidopsis thaliana transcription factor QRAP2 (QRAP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438499.1 | 1e-179 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
Swissprot | Q9M0J3 | 1e-162 | ERF54_ARATH; Ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | D7MDM6 | 1e-170 | D7MDM6_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.7867s0648.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28140.1 | 1e-163 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.7867s0648.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|