PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0626.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 324aa    MW: 36910 Da    PI: 4.4825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0626.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-20110160155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ kl+g
  Bostr.7867s0626.1.p 110 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFSTAEEAAVVYDNAAIKLRG 160
                          59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.91E-35110167No hitNo description
PROSITE profilePS5103223.999111168IPR001471AP2/ERF domain
PfamPF008472.5E-12111160IPR001471AP2/ERF domain
SMARTSM003806.4E-42111174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-30111168IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22111168IPR016177DNA-binding domain
PRINTSPR003671.2E-10112123IPR001471AP2/ERF domain
PRINTSPR003671.2E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMMDGYMDFR PVKYTEHKTV IRKYTKKSSV EKKMSGRDSA RLVRVCLIDR DATDSSSDEE  60
EFLFPRRRVK RLINEIRVEP SSSSSSGQVS ASLTKDRKRL TVDPPVQNQK KYRGVRQRPW  120
GKWAAEIRDP EQRRRIWLGT FSTAEEAAVV YDNAAIKLRG PDALTNFTVP PEPEPEPESN  180
ISVSTSESMD DTQHLSSPTS VLNYQTYVSE EPTNDHVKPV KQEFLEPEQE PISWHLGEGN  240
NNTDDSFPLD IPFLDNYFNE SLPDISIFDQ PMSPIQSSEN DFFNDLMLFD SNNTGESYSS  300
DIKEIGSMFN DLDDSLISDI LLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21110167159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21110167462ATERF1
3gcc_A2e-21110167462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0626.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545900.0AC254590.1 Capsella rubella clone CAP23-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194524.20.0cytokinin response factor 4
SwissprotQ9SUE30.0CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A178V2V50.0A0A178V2V5_ARATH; CRF4
STRINGBostr.7867s0626.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-178cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]