PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0562.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 302aa    MW: 33598.5 Da    PI: 8.69
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0562.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-52141391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF Ptdeel+v+yL++kv+g +++l +vi ++d+yk++PwdLp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
  Bostr.7867s0562.1.p  14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QVIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102
                          79***************************9.99***************8777899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++ +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
  Bostr.7867s0562.1.p 103 IITA-DGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 139
                          9999.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-679162IPR003441NAC domain
PROSITE profilePS5100561.04314162IPR003441NAC domain
PfamPF023655.8E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP  60
SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITADGRR VGIKKALVFY  120
AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTPGSQRQA ATPVQACREE  180
YSTNGSSSSS SSQLDDVLDS FPEIKDQSFN LPRMNSLRTL LNGNFDWASL AGLNPIPELA  240
PTNGLPSYGG YDAFRAAEGE AESGLRNSHV DQQQNSGGLT QSFGYSSSGF GVSGQTFEFR  300
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-10611687174NAC domain-containing protein 19
3swm_B1e-10611687174NAC domain-containing protein 19
3swm_C1e-10611687174NAC domain-containing protein 19
3swm_D1e-10611687174NAC domain-containing protein 19
3swp_A1e-10611687174NAC domain-containing protein 19
3swp_B1e-10611687174NAC domain-containing protein 19
3swp_C1e-10611687174NAC domain-containing protein 19
3swp_D1e-10611687174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0562.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4576210.0KM457621.1 Olimarabidopsis pumila NAC026 (NAC026) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433374.10.0PREDICTED: NAC domain-containing protein 72
SwissprotQ93VY30.0NAC72_ARATH; NAC domain-containing protein 72
TrEMBLA0A0A1EIC10.0A0A0A1EIC1_OLIPU; NAC026
STRINGBostr.7867s0562.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14352795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.20.0NAC family protein
Publications ? help Back to Top
  1. Zhu X, et al.
    Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.
    Plant J., 2015. 84(3): p. 597-610
    [PMID:26407000]
  2. Li S, et al.
    The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence.
    Plant Cell Rep., 2016. 35(8): p. 1729-41
    [PMID:27154758]
  3. Ye H, et al.
    RD26 mediates crosstalk between drought and brassinosteroid signalling pathways.
    Nat Commun, 2017. 8: p. 14573
    [PMID:28233777]