PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0254.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 312aa    MW: 33576.4 Da    PI: 6.0405
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0254.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.8e-15217253135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  Bostr.7867s0254.1.p 217 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 253
                          ******999************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-1381116IPR010399Tify domain
PROSITE profilePS5132014.06981116IPR010399Tify domain
PfamPF062003.7E-1284115IPR010399Tify domain
PROSITE profilePS5101711.985149191IPR010402CCT domain
PfamPF062033.1E-14149191IPR010402CCT domain
SuperFamilySSF577168.55E-13210265No hitNo description
SMARTSM004011.4E-17211264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.515211270IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-15215258IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.58E-16216262No hitNo description
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
PfamPF003205.3E-13217253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MFGRHSQPVI IPNNQIGTAS AASAGEDHVS ATATSGHIPY DDMDEIPHPD SIYGTGSDLI  60
PDGSQLVAHR SEVSELLVSR PLEGANQLTI SFRGQVYVFD AVGPDKVDAV LSLLGGSTEL  120
ASGPQVMELA QQNHMPVVEY QSRCSLPQRA QSLDRFRKKR NARCFEKKVR YGVRQEVALR  180
MARNKGQFTS SKMTDGAYNS GTDQDSAQDD GHPEISCTHC GISSKCTPMM RRGPSGPRTL  240
CNACGLFWAN RGTLRDLSKK TEENQLPLLK MGEGGRVADA DNSNSELATV EEDTSLVSLA  300
NGDNSNVLGN H*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0254.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0353100.0AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds.
GenBankAY0860380.0AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285047.10.0GATA transcription factor 25
RefseqXP_023634106.10.0GATA transcription factor 25
SwissprotQ9LRH60.0GAT25_ARATH; GATA transcription factor 25
TrEMBLR0H0400.0R0H040_9BRAS; Uncharacterized protein
STRINGBostr.7867s0254.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.20.0GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]