PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7867s0209.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 679aa MW: 74652.1 Da PI: 6.0485

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s0209.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.2e-29	309	359	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Bostr.7867s0209.2.p 309 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 359 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.689	298	379	IPR003035	RWP-RK domain
Pfam	PF02042	4.8E-26	311	359	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-23	578	667	No hit	No description
Pfam	PF00564	1.4E-20	582	663	IPR000270	PB1 domain
PROSITE profile	PS51745	27.739	582	664	IPR000270	PB1 domain
SMART	SM00666	1.7E-28	582	664	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.9E-28	582	664	No hit	No description
CDD	cd06407	2.01E-34	583	663	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MTSEKIHYAP EVDKVCKALE AVNLKSSEIL DHQTTQICNE SRQNALAEIL EVLTVVCETH 60 NLPLAQTWVP CQHGSVLANG GGLKKNCTSF DGSCMGQICM STTDMACYVV DAHVWGFRDA 120 CLEHHLQKGQ GVAGRAFLNG GSCFCRDITK FCKTQYPLVH YALMFKLTTC FAISLQSSYT 180 GDDSYILEFF LPSSITDDQE QDMLLGSILV TMKEHFQSLR VASGVDFGED DDKLSFEIIQ 240 ALPDKKIHSK IESIRVPFSG FKSNATETQL IPQPAVQSSD PIKENINVAT VNGVVKEKRK 300 TEKKRGKTEK TISLDVLQQY FTGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKIKKVN 360 RSITKLKRVI ESVQGTDGGL DLTSMAVSSI PWTHGQTSAQ PLNSPSGSKL PEIPNTNNSP 420 NNWSSDHSPQ EPNGSPELPS NGHKRSRTVD ESAGTPTSHG SCDGNQLDET KVPNQDPLFT 480 VGESPGLLFP PYSRDHDVSA ASFLMPNRLL GSIDHFRGML IEDAGSSKDL RNLCSTAAFD 540 DKFPESNWMN NDNNSNNNIY APPKEEAIAN VTREPSGSET RTVTIKASYK EDIIRFRISS 600 GSGIMELKDE VAKRLKLDAG TFDIKYLDDD NEWVLIACDA DLQECLEIPR SSRTNIVRLL 660 VHDVTTNLGS SCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MTSEKIHYAP EVDKVCKALE AVNLKSSEIL DHQTTQICNE SRQNALAEIL EVLTVVCETH  60
NLPLAQTWVP CQHGSVLANG GGLKKNCTSF DGSCMGQICM STTDMACYVV DAHVWGFRDA  120
CLEHHLQKGQ GVAGRAFLNG GSCFCRDITK FCKTQYPLVH YALMFKLTTC FAISLQSSYT  180
GDDSYILEFF LPSSITDDQE QDMLLGSILV TMKEHFQSLR VASGVDFGED DDKLSFEIIQ  240
ALPDKKIHSK IESIRVPFSG FKSNATETQL IPQPAVQSSD PIKENINVAT VNGVVKEKRK  300
TEKKRGKTEK TISLDVLQQY FTGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKIKKVN  360
RSITKLKRVI ESVQGTDGGL DLTSMAVSSI PWTHGQTSAQ PLNSPSGSKL PEIPNTNNSP  420
NNWSSDHSPQ EPNGSPELPS NGHKRSRTVD ESAGTPTSHG SCDGNQLDET KVPNQDPLFT  480
VGESPGLLFP PYSRDHDVSA ASFLMPNRLL GSIDHFRGML IEDAGSSKDL RNLCSTAAFD  540
DKFPESNWMN NDNNSNNNIY APPKEEAIAN VTREPSGSET RTVTIKASYK EDIIRFRISS  600
GSGIMELKDE VAKRLKLDAG TFDIKYLDDD NEWVLIACDA DLQECLEIPR SSRTNIVRLL  660
VHDVTTNLGS SCESTGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s0209.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019086444.1	0.0	PREDICTED: protein NLP7 isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	R0GSX5	0.0	R0GSX5_9BRAS; Uncharacterized protein
STRING	Bostr.7867s0209.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Bostr.7867s0209.2.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]