PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7867s0209.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 959aa MW: 105831 Da PI: 5.6183

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7867s0209.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	589	639	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Bostr.7867s0209.1.p 589 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 639 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.58E-5	212	283	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.689	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-26	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.55E-23	858	947	No hit	No description
Pfam	PF00564	2.2E-20	862	943	IPR000270	PB1 domain
PROSITE profile	PS51745	27.739	862	944	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.4E-27	862	944	No hit	No description
SMART	SM00666	1.7E-28	862	944	IPR000270	PB1 domain
CDD	cd06407	1.51E-34	863	943	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MCEPDDNSAR NGVTPPPSRS RELLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPIFVSSSS 60 EQPCSPLWAF SDGGGNAIHH ANAGGDDEKI SSASCVPSFR LAEYPLFLPY SSPSAAENRT 120 EKHNSFQFPS PLMSLVPSEN TDNYCLIKER MTQALRYFKD STEQHVLAQV WAPVRKNGRD 180 LLTTLGQPFV LNPNGNGLNQ YRMISLTYMF SVDSESDIEL GLPGRVFRQK LPEWTPNVQY 240 YSSKEFSRLD HALHYNVRGT LALPVFNPSG QSCIGVVELI MTSEKIHYAP EVDKVCKALE 300 AVNLKSSEIL DHQTTQICNE SRQNALAEIL EVLTVVCETH NLPLAQTWVP CQHGSVLANG 360 GGLKKNCTSF DGSCMGQICM STTDMACYVV DAHVWGFRDA CLEHHLQKGQ GVAGRAFLNG 420 GSCFCRDITK FCKTQYPLVH YALMFKLTTC FAISLQSSYT GDDSYILEFF LPSSITDDQE 480 QDMLLGSILV TMKEHFQSLR VASGVDFGED DDKLSFEIIQ ALPDKKIHSK IESIRVPFSG 540 FKSNATETQL IPQPAVQSSD PIKENINVAT VNGVVKEKRK TEKKRGKTEK TISLDVLQQY 600 FTGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKIKKVN RSITKLKRVI ESVQGTDGGL 660 DLTSMAVSSI PWTHGQTSAQ PLNSPSGSKL PEIPNTNNSP NNWSSDHSPQ EPNGSPELPS 720 NGHKRSRTVD ESAGTPTSHG SCDGNQLDET KVPNQDPLFT VGESPGLLFP PYSRDHDVSA 780 ASFLMPNRLL GSIDHFRGML IEDAGSSKDL RNLCSTAAFD DKFPESNWMN NDNNSNNNIY 840 APPKEEAIAN VTREPSGSET RTVTIKASYK EDIIRFRISS GSGIMELKDE VAKRLKLDAG 900 TFDIKYLDDD NEWVLIACDA DLQECLEIPR SSRTNIVRLL VHDVTTNLGS SCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MCEPDDNSAR NGVTPPPSRS RELLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPIFVSSSS  60
EQPCSPLWAF SDGGGNAIHH ANAGGDDEKI SSASCVPSFR LAEYPLFLPY SSPSAAENRT  120
EKHNSFQFPS PLMSLVPSEN TDNYCLIKER MTQALRYFKD STEQHVLAQV WAPVRKNGRD  180
LLTTLGQPFV LNPNGNGLNQ YRMISLTYMF SVDSESDIEL GLPGRVFRQK LPEWTPNVQY  240
YSSKEFSRLD HALHYNVRGT LALPVFNPSG QSCIGVVELI MTSEKIHYAP EVDKVCKALE  300
AVNLKSSEIL DHQTTQICNE SRQNALAEIL EVLTVVCETH NLPLAQTWVP CQHGSVLANG  360
GGLKKNCTSF DGSCMGQICM STTDMACYVV DAHVWGFRDA CLEHHLQKGQ GVAGRAFLNG  420
GSCFCRDITK FCKTQYPLVH YALMFKLTTC FAISLQSSYT GDDSYILEFF LPSSITDDQE  480
QDMLLGSILV TMKEHFQSLR VASGVDFGED DDKLSFEIIQ ALPDKKIHSK IESIRVPFSG  540
FKSNATETQL IPQPAVQSSD PIKENINVAT VNGVVKEKRK TEKKRGKTEK TISLDVLQQY  600
FTGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKIKKVN RSITKLKRVI ESVQGTDGGL  660
DLTSMAVSSI PWTHGQTSAQ PLNSPSGSKL PEIPNTNNSP NNWSSDHSPQ EPNGSPELPS  720
NGHKRSRTVD ESAGTPTSHG SCDGNQLDET KVPNQDPLFT VGESPGLLFP PYSRDHDVSA  780
ASFLMPNRLL GSIDHFRGML IEDAGSSKDL RNLCSTAAFD DKFPESNWMN NDNNSNNNIY  840
APPKEEAIAN VTREPSGSET RTVTIKASYK EDIIRFRISS GSGIMELKDE VAKRLKLDAG  900
TFDIKYLDDD NEWVLIACDA DLQECLEIPR SSRTNIVRLL VHDVTTNLGS SCESTGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7867s0209.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282537.1	0.0	protein NLP7
Refseq	XP_023634148.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	R0GSX5	0.0	R0GSX5_9BRAS; Uncharacterized protein
STRING	Bostr.7867s0209.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Bostr.7867s0209.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]