PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s0204.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ARF | ||||||||
Protein Properties | Length: 625aa MW: 70826.1 Da PI: 6.6176 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.1 | 1.9e-24 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF Bostr.7867s0204.1.p 115 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL 202 88****************************9643..445569************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++el+v+v+r+ Bostr.7867s0204.1.p 203 --RGENGELRVGVRRA 216 ..449999******97 PP | |||||||
2 | Auxin_resp | 112 | 5.6e-37 | 241 | 320 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++ k++F v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGtv+gv+d++p +W++SkWr+L+ Bostr.7867s0204.1.p 241 ACHATQAKTMFIVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLE 320 6799**************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.54E-39 | 106 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-41 | 108 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.36E-21 | 113 | 215 | No hit | No description |
PROSITE profile | PS50863 | 12.731 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-22 | 115 | 216 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-24 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-33 | 241 | 319 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.6E-8 | 501 | 558 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.16E-13 | 517 | 598 | No hit | No description |
PROSITE profile | PS51745 | 25.41 | 522 | 622 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.9E-6 | 567 | 610 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MANHGGEYLY DELWKLCAGP LVDVPQAEER VYYFPQGHME QLEASTQQDL NTRKPLFDLP 60 PKILCNVVNV RLQAEKDTDE VYAQITLIPV GTEVDEPMTP DPSPPETQKP KFHSFSKVLT 120 ASDTSTHGGF SVLRKHATEC LPPLDMTQQT PTQELVAEDV HGYQWKFKHI FRGQPRRHLL 180 TTGWSTFVTS KRLVAGDTFV FLRGENGELR VGVRRANRHQ SSMPSSVISS HSMHLGVLAT 240 ACHATQAKTM FIVYYKPRTS QFIISLNKYL EAMNNKFSVG MRFKMRFEGE DSPERRYSGT 300 VIGVKDCSPH WKDSKWRCLE VHWDEPASIP RPDKVSPWEI EPFVTSESVH QSVMLKNKRP 360 RQVSEVSALD VGITASNLWS SVLTQSHEFA QSCITSQRSS SQQCYRDSTE DAKKSEWLNN 420 SYSVSNVSKD STLNDQMVSP VEQKKPETIA NYRLFGIDLM SSSLAASEEK NAPMRPINIT 480 KPTLDSNSDP KSEISKVSEE KKQEPAQTSP KEVQSKQSSS TRSRTKVQMQ GVPVGRAVDL 540 TTLNGYNELI DDLEKLFDIK GELRSRNQWE IVFTDDEGDM MLVGDDPWPE FCNMVKRIFI 600 WSKEEVKKMT PGNQLRMLLT EVET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-162 | 9 | 343 | 19 | 355 | Auxin response factor 1 |
4ldw_A | 1e-162 | 9 | 343 | 19 | 355 | Auxin response factor 1 |
4ldw_B | 1e-162 | 9 | 343 | 19 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s0204.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF082176 | 0.0 | AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448630.1 | 0.0 | PREDICTED: auxin response factor 9 isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A178V403 | 0.0 | A0A178V403_ARATH; Auxin response factor | ||||
STRING | Bostr.7867s0204.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s0204.1.p |