PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7816s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 510aa    MW: 57020.2 Da    PI: 4.9052
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7816s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.74.6e-831455092374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                          ++lL  cA a+++++ +++q++L+ lselas++g++++Rlaa+ ++AL+++l++  s++++++ p  + ++ +++   +al  f+evsP+
  Bostr.7816s0001.1.p 145 EQLLNPCALAITARNSSRVQHYLCVLSELASSSGNANRRLAAFGLRALQHHLTS--SSVSSSFwPIVTFASAEVKMFQKALLKFYEVSPW 232
                          689**************************************************9..777777768888887777777777777******* PP

                 GRAS  91 lkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAee 171
                          + +   +aN+aIl+ +++     + +Hi+D+++s+G+QWp+Ll+aL+sRp ++pp++RiT+v++ +++          ++ ++L  fA++
  Bostr.7816s0001.1.p 233 FALPSNMANSAILQILAQYpidkKDLHILDIGVSHGMQWPTLLEALSSRPeGPPPRVRITVVSDITADipfsVGPPAYSYDSQLLGFARS 322
                          *****************998888999************************55667*********99999998889999************ PP

                 GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflea 260
                          l+++++++vl        +++ +++ p+E+l+++ +++lh+l     s+++er+e L++++sl+Pk v+++e++ +  +s++F+++f+++
  Bostr.7816s0001.1.p 323 LNINLQISVL-------DNFQLIDTLPHETLIICAQFRLHHLK---YSIPDERSEALRALRSLRPKGVILCEKDGEGsTSGDFAAGFSRK 402
                          ********96.......566888999****************8...89999999********************9998999********* PP

                 GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                          ley ++++ds+++++    +e+++ Er+l++ e+++v++++g++    +e + kW er++eaGF + +++e+a + ak+llrk++ +++ 
  Bostr.7816s0001.1.p 403 LEYLWKFLDSTSSGF----KEENSEERMLMEGEATKVLMNAGEM----NEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDnNWEI 484
                          ***********9997....8889999*****************9....9************************************66666 PP

                 GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                          r+e+ +  + l Wk++++ ++S W+
  Bostr.7816s0001.1.p 485 RMEDGDTFAGLLWKGEAVSFCSLWK 509
                          6666666666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.509118488IPR005202Transcription factor GRAS
PfamPF035141.6E-80145509IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.1509.2E-4242440IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPENGFI  60
QSYSQDLSAY VSWEAANLEV VTGAPSIDLD APPEIQQPND QSRKRSRDGL IEAQQVKKSA  120
RSKRKASKFS EKSCKDGNKE GRWAEQLLNP CALAITARNS SRVQHYLCVL SELASSSGNA  180
NRRLAAFGLR ALQHHLTSSS VSSSFWPIVT FASAEVKMFQ KALLKFYEVS PWFALPSNMA  240
NSAILQILAQ YPIDKKDLHI LDIGVSHGMQ WPTLLEALSS RPEGPPPRVR ITVVSDITAD  300
IPFSVGPPAY SYDSQLLGFA RSLNINLQIS VLDNFQLIDT LPHETLIICA QFRLHHLKYS  360
IPDERSEALR ALRSLRPKGV ILCEKDGEGS TSGDFAAGFS RKLEYLWKFL DSTSSGFKEE  420
NSEERMLMEG EATKVLMNAG EMNEGKDKWY ERMREAGFAA EAFGEDAIDG AKSLLRKYDN  480
NWEIRMEDGD TFAGLLWKGE AVSFCSLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-3613650979473Protein SHORT-ROOT
5b3h_B4e-3613650925419Protein SHORT-ROOT
5b3h_E4e-3613650925419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7816s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884991.10.0scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLD7L2900.0D7L290_ARALL; Scarecrow transcription factor family protein
STRINGBostr.7816s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein