PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.7365s0053.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 151aa MW: 16119.5 Da PI: 4.4436 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.7 | 3.6e-16 | 18 | 57 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+Cl kYCeC++ag+ Cs +C Ce+CkN+ Bostr.7365s0053.1.p 18 RHKRGCNCKKSNCLMKYCECYQAGVGCSINCICEGCKNEF 57 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 19.568 | 1 | 58 | IPR005172 | CRC domain |
SMART | SM01114 | 3.5E-16 | 18 | 59 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.7E-12 | 20 | 56 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MVSSEDEDDA SETPASARHK RGCNCKKSNC LMKYCECYQA GVGCSINCIC EGCKNEFGRK 60 EAMVKEVSVS EMMEKASAMV DDAKGIAEKA EKMVAEIETM VEKVAAMATK AGETAAKAAE 120 MVQEAEATME TAKANMAEAF AVMNTVVWDV * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.7365s0053.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289459.1 | 6e-33 | pre-mRNA-splicing factor CWC24 | ||||
TrEMBL | R0FIX6 | 1e-31 | R0FIX6_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7365s0053.1.p | 1e-101 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15341 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22760.1 | 3e-29 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.7365s0053.1.p |