PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7365s0035.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 302aa    MW: 34085.6 Da    PI: 8.4677
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7365s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.21.6e-3765123260
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                          +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk
  Bostr.7365s0035.1.p  65 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 123
                          67899****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2764119IPR003851Zinc finger, Dof-type
PfamPF027018.5E-3367123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.44469123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNHHQYHHHD HDQYQHQMTI TNNIPYNTIV TTQPPPTTTT MDSTTATTII MDDEKKLMTT  60
MSTRPQEPRN CPRCNSSNTK FCYYNNYSLA QPRYLCKSCR RYWTEGGSLR NVPVGGGSRK  120
NKKLPLLLPN SSTSSFTKNL PDLNPPFVFT SSSSPSPSNP SKTHDNNNNN ELSLSFSSPM  180
QDKRAQGHYG HFTEQVVTGG QNGLFQAPMG MIQFRQEYDH DHQKKNLGFS LDRNKEEIGN  240
HDNFVVNGGG SKMMYPYGGY EDHHHHQHVR HDDGNKKREG GSSNELWRGI ILGGDSGGPT  300
W*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7365s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614910.0AL161491.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankTM018A100.0AF013294.1 Arabidopsis thaliana BAC TM018A10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428013.11e-176PREDICTED: dof zinc finger protein DOF4.1
SwissprotQ9M1611e-156DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLR0HC391e-171R0HC39_9BRAS; Uncharacterized protein
STRINGBostr.7365s0035.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.11e-134Dof family protein